CANTATAdb - search

Detailed information on CNT30552443

BLAST search results

BLAST vs Swiss-Prot:
sp|Q0D3N0|PER2_ORYSJ, E-value = 8e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30523062	Oryza glaberrima	Setaria italica	15.31	30.34	91.3	115	forward
CNT30471557	Oryza glaberrima	Saccharum spontaneum	29.83	33.73	79.46	224	forward
CNT305663	Oryza glaberrima	Zea mays	13.85	40.62	85.58	104	forward
CNT30363300	Oryza glaberrima	Sorghum bicolor	30.36	48	83.33	228	forward
CNT30575036	Oryza glaberrima	Oryza barthii	54.19	36.87	100	407	forward

Expression of CNT30552443

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MTGSHQNTRPNTETQSKTENKLNNNKKKKLPLQQLLFSRKAAASNTDRSQTYC*

>peptide 2 (57 aa)
MESRAAKARMSAQETVRGHAASTAALAASITSKPRRLGLFGTAVFSVLFPSIKTEASQ

>peptide 3 (82 aa)
MAASSSSALALLLLTTLQLSLTSPCVVPVFTSMPPIFTMAFTNLLFHRVSLLTNSSTDALSVALVSSAWSDVKRPRLLATPT*

Sequence

>CNT30552443
CCTTGATTCATGACAGGTTCGCACCAAAACACTCGCCCAAACACTGAAACACAATCCAAAACAGAAAACAAATTAAACAACAACAAGAAGAAAAAACTTC
CTCTCCAGCAACTCTTATTCTCGCGAAAAGCAGCAGCTAGCAACACCGATCGATCACAAACTTATTGCTGAAATCTCTGAAGAACACCACATCAGCTACT
ACCTTAATTAGCTCGCTGCCACTTGATCCCCATCATCCATGGCGGCGAGCTCGAGCTCAGCGTTGGCGCTCCTCTTGTTGACGACCCTGCAGTTGAGCCT
GACCTCGCCCTGCGTCGTCCCGGTCTTCACCTCGATGCCGCCCATCTTCACCATGGCCTTCACGAACTTGCTCTTCCACCGCGTCTCGCTCTTGACGAAC
TCGTCCACCGACGCCCTCAGCGTGGCGTTGGTGAGCAGCGCGTGGTCCGACGTGAAGAGGCCCAGGTTGTTGGCGACCCCGACGTAGTACCGGTTGTCGA
GCGCGTCCTGGGCGATGGAGACGTTGCCGTCGCGGCGGCCGGCGGGGACCTTGTAGGTGACGTTGCCGGTGAGGGCGATGGAGTCGCGGGCGGCGAAGGC
GAGGATGTCGGCGCAGGAGACGGTGCGCGGGCACGCGGCCTCGACGGCGGCCTTGGCGGCGTCGATCACCTCGAAGCCCCGGAGGCTGGGGTTGTTTGGT
ACCGCGGTCTTCTCGGTGTTATTCCCGTCGATCAAAACCGAGGCGTCGCAG