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Detailed information on CNT30552396


BLAST search results

BLAST vs Swiss-Prot:
sp|A7QEU4|PER5_VITVI, E-value = 2e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3099522Oryza glaberrimaOryza rufipogon76.8874.0996.73612forward

Expression of CNT30552396

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MESRAAKARMSAQETVRGHAASTAALAASITSKPRRLGLFGTAVFSVLFPSIKTEASQ

>peptide 2 (53 aa)
MTGSHQNTRPNTETQSKTENKLNNNKKKKLPLQQLLFSRKAAASNTDRSQTYC*

>peptide 3 (54 aa)
MVWAPESTTMSSAVSDLLAKRATSSVALKVGGGRLSSASWAMETLPSRRPAGTL*

Sequence

>CNT30552396
TATTTTATTAGCAGTTGGTAATTACGTTCAATGTAGTCTATAATGGAAACTGAATATGCAATTCGTCAACATTTCGCCAAATTTTTTCCTTGATTCATGA
CAGGTTCGCACCAAAACACTCGCCCAAACACTGAAACACAATCCAAAACAGAAAACAAATTAAACAACAACAAGAAGAAAAAACTTCCTCTCCAGCAACT
CTTATTCTCGCGAAAAGCAGCAGCTAGCAACACCGATCGATCACAAACTTATTGCTGAAATCTCTGAAGAACACCACATCAGCTACTACCTTAATTAGCT
CGCTGCCACTTGATCCCCATCATCCATGGCGGCGAGCTCGAGCTCAGCGTTGGCGGAGCTGATCGCCGGGTCGGCGTCGCCGACGCCGGTGAAGTTGTAG
AGGCGGCTGGTGAAGGAGTCGCAGTGGGAGACGCCGATGGTGTGGGCGCCGGAGAGCACCACCATGTCCTCCGCGGTGAGCGACTTGTTGGCGAAGCGGG
CGACGAGCTCCGTGGCGTTGAAGGTGGGCGGCGGGAGGTTGTCGAGCGCGTCCTGGGCGATGGAGACGTTGCCGTCGCGGCGGCCGGCGGGGACCTTGTA
GGTGACGTTGCCGGTGAGGGCGATGGAGTCGCGGGCGGCGAAGGCGAGGATGTCGGCGCAGGAGACGGTGCGCGGGCACGCGGCCTCGACGGCGGCCTTG
GCGGCGTCGATCACCTCGAAGCCCCGGAGGCTGGGGTTGTTTGGTACCGCGGTCTTCTCGGTGTTATTCCCGTCGATCAAAACCGAGGCGTCGCAG