Detailed information on CNT30552389


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690060Oryza glaberrimaOryza sativa66.2622.06100218forward
CNT30369298Oryza glaberrimaOryza glumipatula10072.9599.7329forward
CNT30574974Oryza glaberrimaOryza barthii10078.3399.7329forward
CNT30603466Oryza glaberrimaOryza punctata93.9281.5396.12309forward

Expression of CNT30552389

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MVVCSVVCIISIAQAAGSFREVKGRKKSSCSSTKLLALHKHRKRYDPLQTSSHAEGEWGEDLRRTSRWRS*

>peptide 2 (29 aa)
MILFRHLPTPKVNGVKILGGLHGGGVDDVD

Sequence

>CNT30552389
CATCAGACTGATATGCCAGCACGAATAGGTGAAGGGACCAGTGAAATCTGATCTGAAACTCACATGATAATAACTCACGACAAAAGGAGCTAAACATTAT
TGGTATGGTAGTATGTTCAGTGGTGTGCATTATTAGCATTGCTCAAGCTGCAGGTAGCTTCAGGGAAGTGAAGGGGAGGAAAAAGAGTAGCTGCTCCAGC
ACAAAACTACTAGCATTACATAAGCACAGAAAAAGGTATGATCCTCTTCAGACATCTTCCCACGCCGAAGGTGAATGGGGTGAAGATCTTAGGCGGACTT
CACGGTGGCGGAGTTGATGATGTCGATGA