CANTATAdb - search

Detailed information on CNT30552290

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30690016	Oryza glaberrima	Oryza sativa	83.33	100	100	580	forward
CNT30595586	Oryza glaberrima	Oryza meridionalis	67.39	100	95.95	469	forward
CNT30369171	Oryza glaberrima	Oryza glumipatula	85.06	100	99.66	592	forward
CNT3099731	Oryza glaberrima	Oryza rufipogon	100	70.02	99.43	696	forward
CNT30603526	Oryza glaberrima	Oryza punctata	84.05	100	93.68	585	forward

Expression of CNT30552290

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MQLLRWLPELARLKWKSEIRVEVYRGRKPILRQQPMGLPVDFAEH*

Sequence

>CNT30552290
CTGTGAGGTTTCTTTGGAGACAGGGGTCTTCACCTCTTCAGCATTTAAACTCCACTGATCCATCATAAGCGGGTAACTTTGTGGAATCAAAGCATTTGGT
GGCGAAGTTGGCAACATTGACTGATTAGTTCCTTTAGCAAGACTCTCACTTGGAGGGAATGCAGCTATTGCGGTGGCTACCTGAGCTTGCACGTTTGAAA
TGGAAGTCGGAGATACGTGTTGAGGTGTATCGAGGAAGAAAGCCCATCCTTCGTCAGCAACCAATGGGGCTGCCTGTTGACTTTGCTGAACACTAGTCGT
AGGTGGCAGTTGTTGGTCAAAGCCAGCAAATAAATCTATTGACGGAGGGGTAGAGGAAATTGAAGGTTCCTGCAAAGGCGACAGACTCAAGAGATCATGA
TGGACAGGATGAGATGTAGAGGGTGCTTCGGCTTGAACAGGTGGTGAAGATGCCACGGCTTTCTGAACCACAACGTCATGCAGAGTTTCTTTAGGAACAG
AATGGCTGCCTACATCAACTGCTCTATGGGGAACTGATGGAGCCTGTTGGTTAAAGCCAGCAAAAAGATCTATTGGTGCTGCAGAATTGACCGGATGTTG
CATTGACTGATCAAAGAAGTCCTGATTTGTGGAAGTCGTTGGCTGTGTTGAAACCGGTGGCTTTGCTACAGAGACCATGTGAACCCTTCCATGTTG