Detailed information on CNT30552241


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690713Oryza glaberrimaOryza sativa24.4429.0396.95164reverse complement
CNT30595547Oryza glaberrimaOryza meridionalis24.4447.2695.12164reverse complement
CNT30369317Oryza glaberrimaOryza glumipatula19.8220.8598.5133reverse complement
CNT30100028Oryza glaberrimaOryza rufipogon24.4426.0396.95164reverse complement
CNT30574722Oryza glaberrimaOryza barthii57.2362.04100384reverse complement
CNT30115578Oryza glaberrimaOryza nivara23.5528.8893.67158reverse complement

Expression of CNT30552241

Peptides detected in this lncRNA

>peptide 1 (30 aa)
PHTELTSPSRVAPKQSREGEERSAISRPIE*

>peptide 2 (54 aa)
MRESSPSSDRRRRHPSIYICFASTTHHLSTAPRSTPLRLRVHLNDDDDASSPCG*

>peptide 3 (37 aa)
MLCSCACSSCTSHVTASRASLYYCFFFTFTVSPRTLV*

>peptide 4 (95 aa)
PTQSSQAQVASHRSRVEKERSGAPSAVRSSDPMALALSTSAAAAAAKDGSLSAAAREVSWVPDPVTGHYRPSNFAGGADAADLRAAHLARSYARA*

Sequence

>CNT30552241
TCCCCACACAGAGCTCACAAGCCCAAGTCGCGTCGCACCGAAGCAGAGTAGAGAAGGAGAGGAGCGGAGCGCCATCAGCCGTCCGATCGAGTGATCCGAT
GGCTCTCGCTCTCTCCACCTCTGCTGCTGCCGCCGCCGCGAAGGACGGGTCGTTGTCGGCGGCGGCGAGGGAGGTGTCGTGGGTGCCCGACCCCGTGACG
GGCCACTACCGGCCCTCCAACTTCGCCGGCGGCGCCGACGCCGCCGACCTCCGCGCCGCCCACCTCGCCCGCAGCTACGCCCGCGCGTGATGCGCGAGAG
CTCGCCGTCGTCCGACCGACGACGACGCCATCCATCCATATATATCTGCTTCGCGTCAACTACTCATCACCTCTCGACCGCGCCGCGCAGCACGCCGCTC
CGCCTCCGCGTGCACCTGAACGACGACGACGACGCATCATCGCCGTGCGGCTGATCGGCGGCGGCGGCGGCGGCGGCGGCATCCCTACCGTTTCCTTGCT
GCGTGTGGGCTGGATGCTCTGCTCGTGTGCTTGTTCTTCGTGCACCTCTCATGTAACAGCGAGCAGGGCCTCACTTTACTACTGTTTTTTTTTTACTTTC
ACGGTTTCACCACGTACCCTAGTGTGATGGTTTTAATGGAACAAGTAATAAATCAGTTTTAGTTTCCTTTC