Detailed information on CNT30552239


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000270, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697308Oryza glaberrimaOryza sativa53.0247.6491.57878forward
CNT30596758Oryza glaberrimaOryza meridionalis53.1491.6792.16880forward
CNT30106623Oryza glaberrimaOryza longistaminata49.5875.691.11821forward
CNT3099966Oryza glaberrimaOryza rufipogon78.0891.5798.381293forward
CNT30574647Oryza glaberrimaOryza barthii92.5779.6499.81533forward
CNT30118029Oryza glaberrimaOryza nivara53.1475.692.84880forward

Expression of CNT30552239

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVFLSKTISFLLSLRAQRTAEAPTRIIFFIFLLTPKS*

>peptide 2 (33 aa)
MLHIHISLHVQVHDVIHISFFRKFLFTLFKYHA*

>peptide 3 (38 aa)
MFKFTTLFIFRSSGSFCLHYSSTMRSYGSAIWIFIHDP*

>peptide 4 (61 aa)
KNENKKKKNRGIAPASPSRHISCVLPPPPLFLSPPAPPPPPVQPSSSFATPSARLLAWLAA*

>peptide 5 (79 aa)
KTKTKRKKTGGSLLQALAATSPASYHRRRCSCLRRRRRRRRFSRRRPSPPHPLVSLRGLLLDAAASIRDEKAPDSTGSS*

Sequence

>CNT30552239
AAAAACGAAAACAAAAAGAAAAAAAACAGGGGGATCGCTCCTGCAAGCCCTAGCCGCCACATCTCCTGCGTCCTACCACCGCCGCCGCTGTTCCTGTCTC
CGCCGGCGCCGCCGCCGCCGCCGGTTCAGCCGTCGTCGTCCTTCGCCACCCCATCCGCTCGTCTCCTTGCGTGGCTTGCTGCTTGACGCTGCTGCATCGA
TCAGAGACGAGAAGGCTCCAGACAGCACAGGAAGCAGTTGAACAGGAGTAACAAGGGAAGGAAAAGGTATGGAGGGTTCCAACGTTGGAGGAGTTGAGTC
GGAGTATTGAAGGAGTTAAAGCAAGTACAAGACGGACTTGTGCGATGGATAAACTGTGTTACTTTGTTGGTTTTATTTACCCAATTATTATTTGAAGCTT
CCTATTATCAATTGTGTGGTTTTGGTATTATGTTACATATTCATATTTCACTTCATGTTCAAGTTCACGACGTTATTCATATTTCGTTCTTCCGGAAGTT
TCTGTTTACATTATTCAAGTACCATGCGTAGTTATGGGAGTGCAATTTGGATCTTTATTCATGATCCTTGAGAAGCGCTGATCACGCTTGCTCGGCTTAC
CGGTAATGCTAAGAGGATATTCACACCTGCTCGGGAGGGAACTACTACTTTTTGTCTCCTTCGTTTTAAATTAATGGAAAGCAAATGTTTCATATTGGTT
TCTTATTGCACTAAACCTGCGTATGTTTTACTAGTTCAATATTGTACTTGCTAAGTATTCTTTACTCACTCTTGTGTTTAATTTGGTTTTTAGGTACCAA
ATGACATTGATCGGCATGGGGCGGGAGTAGCACCCTTGGACTACACATTATTATTGCACACTATTGGAATTTAGTTTTAGATTATGTTTCTGCTTAGCAT
AAGTTTTGCGTAGAACTTGTAACGGTCATTTAAAGTTCCGGTCCTTATTTTCACGTGGAATTTGAGGAGCTAGGATGGTTTGGATTGTGTGGATTATATC
GTTATTGAGTTATCTTATAACTGACTGTCGTGGATGTCCGTAATTTTAGGAGGAGACTGCCGAAATTTCTAATAATTTTCGGAGTTAGTGGTTTTTGAGT
GTATTTTGGTGTGGCACTCTAGGTACGTGGTTACCTGGGATGTTACATAGACACCAACAGAAGAAAAAGATCCCCTAACTACTTAATTCTATTAGAGAAC
CTCGACCCGAAGTTGGCAATAGATGCATAATTGTCGTGTCAAGTTTACGACATTCATCATTTATTAGCTTGATATCTTCATCATGTCTTTGTAGTTGAAC
CCATCCTCGAAACTAATATGTTGCCCTGAAAAACACCTGCAAATAAGATTTTGATGGTGTTTTTATCAAAAACCATATCATTTCTACTAAGCCTAAGAGC
CCAACGTACAGCGGAAGCTCCAACAAGAATAATTTTTTTTATTTTTTTACTAACACCCAAAAGCTAATTCCCAAACGTATGAGATATACTATGTAGAGGA
TAAAGTCCAAAAAATAATTGTATAGCTCTCCAAAGAAATTTAGAAACATGGCACTCAAAGAATAGATGGTATATTGATTCATTTTTCATATAAAAGCAAC
ATCTTAAACTATCATTCCAATTCCTTCTAGTCAAATTATCTTTAGTTAAAACGATC