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Detailed information on CNT30552202


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693878Oryza glaberrimaOryza sativa36.5311.9787.71236forward
CNT3099899Oryza glaberrimaOryza rufipogon60.2262.44100389forward
CNT30574959Oryza glaberrimaOryza barthii41.4984.28100268forward

Expression of CNT30552202

Peptides detected in this lncRNA

>peptide 1 (88 aa)
MAIKADLASPSSYTLVSEELRVRQYIVITFSDIVHDSFKPLEGPLLSGHPVEVSSSWPIVLEAAYLRTICAASTDLPKQVSEFSRPVT*

>peptide 2 (50 aa)
KRGSPMREFLWAFAKSENTFLQLGLAKCVRICNRSIRNKRNTLEINKYFR*

>peptide 3 (30 aa)
MHTQVVISRCRSDGEGMPAKAGKTVRNSLR*

>peptide 4 (30 aa)
MEKGCLQRQEKQLEIVSDKPHFGHAFMRQG*

Sequence

>CNT30552202
AAAAAAGAGGCTCACCTATGCGTGAGTTTTTGTGGGCATTCGCCAAGTCAGAGAACACCTTTCTCCAGTTAGGCCTCGCAAAATGTGTGCGAATCTGCAA
CAGATCAATCAGAAATAAGAGGAATACACTGGAAATAAATAAGTATTTCAGATAGAAGAGGGGGAAGATGTCGAATACCCTGCTGCCGGAGACGATATCC
ACACCATTTTTGGCATGTTGAAGTGACTGAACCATGGCAATCAAAGCTGACCTTGCGTCGCCTTCTTCATACACGCTGGTCAGCGAAGAATTGAGAGTGA
GACAGTACATTGTGATCACTTTCAGCGACATCGTTCATGACTCCTTTAAACCACTCGAAGGACCCTTGCTCTCTGGTCACCCAGTAGAAGTAAGCTCTTC
CTGGCCCATTGTTCTTGAAGCTGCCTATCTCAGAACCATCTGTGCTGCCTCAACTGACCTTCCCAAACAGGTTTCTGAGTTCAGTCGTCCAGTCACCTAG
TGTACGGATATGCACACTCAGGTAGTCATCTCCAGGTGCAGAAGTGATGGAGAAGGGATGCCTGCAAAGGCAGGAAAAACAGTTAGAAATAGTCTCAGAT
AAACCACATTTTGGACATGCATTCATGCGACAAGGGTGAATTGGTT