Detailed information on CNT30552185


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690339Oryza glaberrimaOryza sativa75.1624.5999.42342forward

Expression of CNT30552185

Peptides detected in this lncRNA

>peptide 1 (46 aa)
LSPPMADRRRRRSISPSVAPLPLSSHHRLRLHPASPFFPFPLSLHL*

>peptide 2 (59 aa)
LSSHGRSSTPSVDLPIRSSSSPLLAPPASPPSGESIFPLSPLPPPLSQVTTTIIHAGSW*

>peptide 3 (84 aa)
MPAHGEPLPPLFRPSPSLPPPATTLTGCASSGNTCFRRRRNLSTTGAPAPNLSLLCVLGRKKKERRRRREKEREREKKKKRRTE*

>peptide 4 (92 aa)
MVSPCRRCSGHLPHSLHLPLPSPGARRPGTRVSAGVATSRPPEHRRPTSLSSVFSAERRRKEEEDGRRREKEKRKRKGERSDRVYFILDGNL*

Sequence

>CNT30552185
CTCTCTCCTCCCATGGCCGATCGTCGACGCCGTCGGTCGATCTCCCCATCCGTAGCTCCTCTTCCCCTCTCCTCGCACCACCGGCTTCGCCTCCATCCGG
CGAGTCCATTTTTCCCCTTTCCCCTCTCCCTCCACCTCTAAGTCAAGTCACCACCACCATCATCCATGCCGGCTCATGGTGAGCCCTTGCCGCCGCTGTT
CCGGCCATCTCCCTCACTCCCTCCACCTGCCACTACCCTCACCGGGTGCGCGTCGTCCGGGAACACGTGTTTCCGCCGGCGTCGCAACCTCTCGACCACC
GGAGCACCGGCGCCCAACCTCTCTCTCCTCTGTGTTCTCGGCAGAAAGAAGAAGGAAAGAAGAAGAAGACGGGAGAAGGAGAGAGAAAGAGAAAAGAAAA
AGAAAAGGAGAACGGAGTGACAGAGTCTATTTTATTTTGGATGGCAACCTGTGAT