Detailed information on CNT30552115


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690067Oryza glaberrimaOryza sativa45.3210099.59489forward
CNT30109530Oryza glaberrimaOryza longistaminata79.795.2498.26860forward
CNT30574809Oryza glaberrimaOryza barthii81.56100100880forward

Expression of CNT30552115

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MWLAIKGHCLTADNLQMKGWPNQHDCLQYQQMHETCKCLLVECAYKNRVWRYKIRPFEDW*

>peptide 2 (48 aa)
MTVCNINRCMRPASACWSSVLTRIECGDTRSDHLRTGDCRRGRRSRSN*

>peptide 3 (78 aa)
DESSQNPIPFQPSSPRRRAAPSSTAAGEGAADEAGWSRSRGLHSIVSQSLPERAPRSRSRRCGGPALAMVVMNLSHQI*

>peptide 4 (70 aa)
TSPARIPSPFSPRRRGGGPRRRPPLLARGRRMRQGGPDLGASTPSSPNPSRSALPAAAAADVAARRSPWS*

>peptide 5 (32 aa)
RRVQPESHPLSALVAAAAGRAVVHRCWRGGGG*

>peptide 6 (39 aa)
MKLTQAAVLQYPILRNGTNRGTRLHRSGSSCGWQSKAIV*

>peptide 7 (33 aa)
MYTSYFNLVQLVGRFFNSANPAKMCPMHTYILY*

Sequence

>CNT30552115
CGACGAGTCCAGCCAGAATCCCATCCCCTTTCAGCCCTCGTCGCCGCGGCGGCGGGCCGCGCCGTCGTCCACCGCTGCTGGCGAGGGGGCGGCGGATGAG
GCAGGGTGGTCCAGATCTCGGGGCCTCCACTCCATCGTCTCCCAATCCCTCCCGGAGCGCGCTCCCCGCAGCCGCAGCCGCCGATGTGGCGGCCCGGCGC
TCGCCATGGTCGTGATGAACTTGTCGCATCAGATCTGAGCTACTCAAATTGGAGGTGACGAATCATACGACTCATCTGTTCCTACAGCAAGAAATCCATT
GCACGCACAGATTGAGATTTTAGCAAAGTTTTTAAGTTCAAATCTGTCCATTTAGGAGGTGATGAAGTTAACACAAGCTGCTGTACTGCAATACCCCATA
TTAAGAAATGGTACAAACAGGGGAACTAGGCTCCATCGATCCGGTTCTTCATGTGGTTGGCAATCAAAGGCCATTGTTTGACGGCAGATAACTTGCAAAT
GAAAGGGTGGCCAAATCAGCATGACTGTTTGCAATATCAACAGATGCATGAGACCTGCAAGTGCTTGTTGGTCGAGTGTGCTTACAAGAATCGAGTGTGG
CGATACAAGATCAGACCATTTGAGGACTGGTGACTGTCGACGAGGCCGGCGTTCGAGAAGCAATTAAGAAAAGCTTTTGATTCGCTGTGTTTTATGTTAA
GCTGTCTAGTTTGGAAGGAGAGGAGATGCTAGAATTTTCGACCAACGAATGAAATCTACCTTGCAGCTGCTTGGGGAAGTCAAAGAGGAGATCATGCTCT
GGAGAGAAGCTGGAGTGTTCATGAATCCTTAGGAGTAGTTTGCAGCCCTAGCGACTACCAGCTGCTGCTGGCATGTTTCTCATCAGGTCTCGGCAGAGGC
TCGTTGCTTTTCTTGTATCTAACTTTGTAACATTATGTATACATCTTATTTCAACTTAGTACAATTGGTTGGCCGCTTTTTTAATTCGGCCAACCCAGCC
AAAATGTGTCCGATGCATACATATATTCTGTATTGAGATCCCAAAAGACAGAAATATCACACGGTTATGATGCCATCAA