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Detailed information on CNT30551777


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697166Oryza brachyanthaOryza sativa20.3735.5192.27207forward
CNT30379240Oryza brachyanthaManihot esculenta10.5324.7785.98107forward
CNT30296867Oryza brachyanthaTriticum aestivum26.1837.8481.58266forward
CNT30223071Oryza brachyanthaHordeum vulgare16.7322.7985.29170forward
CNT30392014Oryza brachyanthaTriticum turgidum28.5455.9882.41290forward
CNT30662954Oryza brachyanthaTriticum dicoccoides17.0336.1284.97173forward
CNT3074932Oryza brachyanthaBrassica juncea14.7647.4781.33150forward
CNT30136831Oryza brachyanthaLolium perenne17.6234.6982.68179forward
CNT306857Oryza brachyanthaZea mays27.5613.1585.71280forward
CNT3068390Oryza brachyanthaLeersia perrieri25.4948.9690.35259forward
CNT30683693Oryza brachyanthaTriticum urartu17.0322.1884.97173forward
CNT30365435Oryza brachyanthaSorghum bicolor15.1620.0889.61154forward
CNT30151279Oryza brachyanthaBrachypodium distachyon21.1638.9584.19215forward
CNT30117928Oryza brachyanthaOryza nivara22.3432.3488.99227forward
CNT30604795Oryza brachyanthaOryza punctata23.8215.3190.91242forward

Expression of CNT30551777

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MNNGRVEEGSNRRRSQSSWRPGWRHQEQPHSSTCQPAAHA*

>peptide 2 (77 aa)
MASWLASPRAASLKYLSASCTRLTFSCSLTSIWPYSRSFWIVILGCSNSGGPSLEFTSLLPMFSTPVSDTHLRTSSS*

Sequence

>CNT30551777
GGCAAACGATCAATACAACCAGGGGTAATTAATTTACCAAAATGAAAATCTTGCATGTAGTGTAGTGTAGGGAATATCTTTTATATTATATTATTATTAA
CAAAAACTTGTCCTGCCCAGCTATGGCTTGGGCGCGATCTGATACATGTAGTACAAAGAGAAAATTAACACAAAGAGAGAGATAATTAATATATAGCAAG
AGGCCTGCTTAGAAGGTGTAGAGGCAGCTGCCGTCGTCGCTCCTCGCCGTCGGGTCGAAGTTCTTGGCACCAGGGTCGGTGCAACCTTCCGGCACAGGCA
GGTTACCTGCTTGCTGTTGAATCACCTCCTCCTCCTATGCAGACCGCCTACGAGATCGATGGTACGAGAATAGCTAGAGATCGTTTGTTCAGCTGGATGG
CGCAGCACCTATAGACAGGGGCGGAGGCAGATTGAATTTTGTCACGCTCAACCATGTAGTATTATAAATTTGTGGAAGAAATCTGAACTAAAAATTTATA
ATTTCCTTTAATTGTTATGTCACATGCGGGGCTTAAGCGCAAGCTGCCCCACACGTGGCTCCGCCCCTGCCTATAGAATAATTACTTAACAAAATGTACG
TGCGTGATGGTCATAATTAATTTAGAGGACGTAGGGGTTTGTCCCAACACCTTACATATATAAGTTGTTTTGATTTATCATGAACTAGAACTGAATGAAT
AATGGCAGAGTAGAAGAAGGTTCTAACCGTAGAAGGAGCCAGTCTTCATGGCGTCCTGGTTGGCGTCACCAAGAGCAGCCTCACTCAAGTACTTGTCAGC
CAGCTGCACACGCTTGACGTTCTCCTGCTCCCTGACAAGCATTTGGCCGTACTCTAGGAGCTTCTGGATCGTCATCTTGGGCTGCTCGAACTCCGGCGGG
CCCTCCCTGGAGTTCACCAGCCTCTTGCCGATGTTCTCCACTCCGGTGTCAGACACCCACTTGCGCACCTCGTCGTCGTAAACACGGGCACGGAGAGCGC
CGAAGAAGTCTGATCC