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Detailed information on CNT30551656


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677961Oryza brachyanthaSetaria viridis17.2321.2182.31147forward
CNT30179972Oryza brachyanthaSecale cereale22.0425.6885.11188forward
CNT30309159Oryza brachyanthaTriticum aestivum21.6932.482.16185forward
CNT30220948Oryza brachyanthaHordeum vulgare22.2722.3882.11190forward
CNT30555228Oryza brachyanthaOryza glaberrima27.4334.6787.18234forward
CNT30437233Oryza brachyanthaAegilops tauschii21.6924.4783.24185forward
CNT30252009Oryza brachyanthaAvena sativa22.8619.6685.64195forward
CNT30659258Oryza brachyanthaTriticum dicoccoides18.1773.1183.87155forward
CNT30132649Oryza brachyanthaLolium perenne20.8711.883.15178forward
CNT30109906Oryza brachyanthaOryza longistaminata27.4332.2887.18234forward
CNT30103605Oryza brachyanthaOryza rufipogon27.4334.6290.6234forward
CNT30577832Oryza brachyanthaOryza barthii27.4338.7487.18234forward
CNT30117627Oryza brachyanthaOryza nivara26.6134.5590.75227forward

Expression of CNT30551656

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MRRCPQTGERSWTAPGRGMARWRRCGAGRRSRSCGGRRRAGR*

>peptide 2 (53 aa)
MLMGSGSCRRRRRRCPQTGERSWTAPGRGMARWRRCGAGRRSRSCGGRRRGGR*

Sequence

>CNT30551656
CACATCTAATATTACAAACATATCCCTCATCCCTGCTGATACCATATAAATAGATACAAGTACAAACTGAAACTCCTCTGGATGAAAAAGCTAATGTTTC
ACCTGAATCTCAAACACATTATTATGCAGACAAACTGACAGGCCGGGCAGCAAATCATCATCATGTTCGTCGTTGCCTAGTTCGCCGGAGGGGTGGGGTT
GTGGTACTCCGGCGCCGGCTGCGGCTTCGGCTCAGGCTTGGGTGGCACCGGCTTCTTGTGGAAGTGGTCGAAGAAGTGCTTCTCCTTCTTGTGGAAGTGG
TCGAGGAAGGGGTGCTCCGGCTCGGGCTTCGGCTTGGGCGGCTCCGGCTTGGGCTCGGGCTTCGGTGGCACGGGCTTCTTGTGGAAGTGGTCGATGATCT
TCTTCTTGATCGGGCCGCAGATGGTCGCCGACGCGCATAATGCTGATGGGTAGTGGGTCTTGCCGGCGACGGCGACGAAGGTGCCCTCAGACTGGGGAAC
GATCTTGGACGGCTCCTGGCCGGGGCATGGCTCGTTGGCGGCGGTGTGGAGCTGGGCGACGCAGTCGGAGCTGTGGAGGTCGGCGTCGAGGGGGACGCTG
AATGCGCCGGTGCCCTCAGACTGGGGAACGATCTTGGACGGCTCCTGGCCGGGGCATGGCTCGTTGGCGGCGGTGTGGAGCTGGGCGACGCAGTCGGAGC
TGTGGAGGTCGGCGTCGAGCGGGACGCTGAATGCGCCGGTGCCGTCGAGCTTGCCGGCGGCCTTGCTCTCGTACTCGCCATTGCTGTTCTTGCACTTGAT
CGCCACCTGGAGACCTGCACAAAAACATTTCCAAATAACAGTGTAAAATTTCG