Detailed information on CNT30551516


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695785Oryza brachyanthaOryza sativa38.0340.784.17278forward
CNT30555806Oryza brachyanthaOryza glaberrima40.3671.681.02295forward
CNT3068000Oryza brachyanthaLeersia perrieri17.134.8286.4125forward
CNT30106495Oryza brachyanthaOryza longistaminata38.0358.5383.45278forward
CNT30102866Oryza brachyanthaOryza rufipogon40.3647.6681.69295forward
CNT30577336Oryza brachyanthaOryza barthii26.138.6986.91191forward

Expression of CNT30551516

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRKRGKFWFDVSSFVLRPIYMEDVLQDPASI*

>peptide 2 (44 aa)
MFFKTQHQFDGRQTESCQFNPSWCLLRFEIWQQHMESLLCCSIV*

>peptide 3 (42 aa)
MLSRLISEPVLSAVSMANLSARASSLLSDPEQCSKISEHTLK*

Sequence

>CNT30551516
GTCTGTTGCTAAAACTCTCTGTTGTGCTTGAGAGATGAGAAAGAGAGGAAAGTTTTGGTTTGATGTGTCTAGCTTTGTGCTGAGGCCTATTTATATGGAG
GATGTTCTTCAAGACCCAGCATCAATTTGATGGTAGACAAACAGAATCCTGCCAGTTCAACCCCAGTTGGTGTCTCTTAAGGTTTGAGATCTGGCAGCAG
CATATGGAATCTCTTTTATGTTGTTCAATTGTTTAATGCACTGGTATCTATCTTCCAAGTGAGCTATCACATTGGCATGTCTCAACTATTGGCGGCAAGA
ATCAGCAAGTTAGCTCACTTTATTTGTGGAGCTTGACATAATTGCATCCACTAAACGTTTTCTAGTGGAGTTCAAACAAAGTTCTGTTGGCAACGTGCAT
GCTATCTAGGTTAATATCAGAGCCTGTCCTGTCTGCTGTATCAATGGCAAACTTATCTGCACGAGCAAGTAGTTTATTGTCAGATCCAGAACAGTGTAGC
AAGATCAGTGAACATACATTGAAATAATGGGAAGGAGCTGGTTGATGATTCTGGTGGGAGGAATGGTTGGCTTCACCTCCAGGTGGATGCAGATCACAGG
GAGTCAGAGTTGATTTATATTCTATCTACAAGCTTAGAGCATTCAGAAGAGAAACTCTTGTCTGGATCAATCTCCTGAACAAAGTCTCAACTCCGCTCTC
GAGATGAAAGATGGCCAACTCCATCTCCGGC