Detailed information on CNT30551372


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671641Oryza brachyanthaSetaria viridis39.2543.1285.64188forward
CNT30554357Oryza brachyanthaOryza glaberrima52.6156.3884.92252forward
CNT30370667Oryza brachyanthaOryza glumipatula59.0855.0685.16283forward
CNT30102728Oryza brachyanthaOryza rufipogon54.4951.5885.44261forward
CNT30117104Oryza brachyanthaOryza nivara36.1228.1390.17173forward

Expression of CNT30551372

Peptides detected in this lncRNA

>peptide 1 (63 aa)
VMQVFFLALISSSGSQKYLQTNRPSKNMQSKRCVSSTKYMAIRLHFDIVKSVYTNLQNNTAKR*

>peptide 2 (45 aa)
MAAAVSPAVALSLMDDADARTAILAAGLALTGRAWNDEAPSGFLSP

Sequence

>CNT30551372
GTGATGCAAGTCTTTTTTTTAGCACTGATCAGTAGCTCCGGGAGCCAAAAATATTTGCAAACTAATCGTCCTTCAAAAAACATGCAGAGCAAGCGGTGTG
TGTCAAGCACAAAATATATGGCAATTCGACTCCATTTTGATATCGTAAAATCAGTTTACACAAATCTCCAAAACAACACTGCAAAGAGATGATCTTGATA
CAAGGCAGCGAGGGCATGTCCGTGAAGAAGTAGAGCAAGAGGACGATCAGGTCCGCTTGACGGGCAGGAAGTTCTTGAGAGACGGCGTCAGCGCGCCCTG
CGCGGCCTCCGCGACGTGGGGGGGGCCCATCCCCGCCGCCATGGCCGCGGCCGTCAGCCCGGCCGTCGCCCTCTCCCTCATGGACGACGCCGACGCCCGG
ACGGCCATCCTCGCCGCGGGCCTCGCCCTCACCGGCAGGGCCTGGAACGACGAGGCTCCCAGCGGCTTCTTGAGCCCCG