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Detailed information on CNT30551255


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693964Oryza brachyanthaOryza sativa54.5529.8987.18156forward
CNT30370409Oryza brachyanthaOryza glumipatula21.337.8395.0861forward
CNT30102318Oryza brachyanthaOryza rufipogon21.339.8495.0861forward

Expression of CNT30551255

Peptides detected in this lncRNA

>peptide 1 (39 aa)
AWRGRRRRRRPRRLPCRERRGRSATTSSSGERRGRRKGR*

>peptide 2 (56 aa)
SMARAATATAAAPAALPREARTISDDLVLRGAEGAKEGTVTAAEERAAMVCCGCCR*

>peptide 3 (64 aa)
HGAGGDGDGGRAGCLAERGADDQRRPRPPGSGGGEGRDGDGGRGKSGHGMLRLLQVTDLDEARG*

Sequence

>CNT30551255
AGCATGGCGCGGGCGGCGACGGCGACGGCGGCCGCGCCGGCTGCCTTGCCGAGAGAGGCGCGGACGATCAGCGACGACCTCGTCCTCCGGGGAGCGGAGG
GGGCGAAGGAAGGGACGGTGACGGCGGCAGAGGAAAGAGCGGCCATGGTATGCTGCGGCTGCTGCAGGTGACTGACCTGGACGAAGCTAGAGGGTAGAGT
TGTTACGCCGCCGGCGTAGTACGTGGTTGCTATAAAATAAACGAAAGGAATGGATCGAGGTGGTGAGATCGAGCTGAGCTGAGGAG