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Detailed information on CNT30550957


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3067217Oryza brachyanthaLeersia perrieri14.9129.8287.882forward
CNT30369992Oryza brachyanthaOryza glumipatula3262.8686.93176forward
CNT30101142Oryza brachyanthaOryza rufipogon31.8287.0686.86175forward
CNT30604068Oryza brachyanthaOryza punctata32.1867.0585.88177forward

Expression of CNT30550957

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MPPKTKVRGLAHLKHSSFPFLQTVAALRVRKSDIWFV*

>peptide 2 (43 aa)
MNVDGFPTTSGSCLVEPRIAPTIDPPPGEDKIFMILSISGMRSF

>peptide 3 (54 aa)
FIRNNYVCSLLTLICTCVTYNSIKHMSRGYKTMCKEKHLWCWLLKIVGCRLKQK*

Sequence

>CNT30550957
TTTATCAGAAACAATTATGTTTGCTCATTATTGACATTGATATGCACTTGTGTTACATATAATAGTATAAAGCATATGTCTCGCGGTTACAAAACAATGT
GCAAAGAAAAGCACCTTTGGTGTTGGTTGCTAAAAATTGTCGGATGCCGCCTAAAACAAAAGTAAGGGGCCTTGCCCATCTAAAACACAGCTCCTTCCCA
TTTCTTCAGACAGTTGCTGCTTTGAGGGTGAGAAAATCAGATATTTGGTTTGTGTAGAAATCTGGCTGGATCGAGGACCTGAAAGAACCAGAAGAGTTTT
GCAGCCTCCGTTTTGGCCAAACAAGATGTCGGTATCCAAACGGTCACCAACCATGCATATCTGAGATGTGGTGATTCCAAACCTGACACAGAGTAAACAA
GAAAAAGGTAGTCCATCATGAATGTTGACGGCTTTCCGACGACGAGTGGTTCTTGTTTAGTTGAACCAAGGATTGCACCAACCATTGATCCTCCACCTGG
TGAAGACAAAATATTCATGATTTTAAGCATATCTGGTATGCGTTCATTCA