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Detailed information on CNT30550641


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003266, E-value = 4e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691303Oryza brachyanthaOryza sativa27.914.5683.74455forward
CNT30108168Oryza brachyanthaOryza longistaminata27.919.5483.74455forward
CNT30100211Oryza brachyanthaOryza rufipogon23.375.181.58380forward
CNT30575176Oryza brachyanthaOryza barthii27.167.0783.26442forward
CNT30115971Oryza brachyanthaOryza nivara27.9620.9383.55456forward

Expression of CNT30550641

Peptides detected in this lncRNA

>peptide 1 (39 aa)
SKTARKVHGKIGFYSSKIQYRVAGTMVKYITYNALLSWA*

>peptide 2 (34 aa)
MDPSVSSAGKFSLPSVQLVGSFSLEPAETKTVPH*

>peptide 3 (31 aa)
MLYSLGHNSKLKNCRVNIKGSLSVLRDKHTG*

Sequence

>CNT30550641
GTCCAAAACGGCAAGAAAAGTACATGGCAAGATAGGATTCTACAGCAGCAAAATACAATACAGGGTAGCAGGCACCATGGTTAAATATATTACATACAAT
GCTCTACTCTCTTGGGCATAACTCAAAACTAAAAAACTGTCGAGTAAATATCAAGGGCAGCCTGTCTGTCCTAAGAGACAAGCACACGGGCTAATGGTTG
GTCTATACGGGCAGATCTGGCGGTTCTGAACTAACCTACTACTACTATAATCGCTGCTCACTTTGAAAGGACTGTGTTCTAGTTGCAGGTAACCAAGGTC
TTCAGCTTCAGCAATCACCATCCTACCACTATAATCACTGTTCACTTTGAAAGGACTGTGTTCTAGTTACAGGTAACTAAGGTCTTCAGCTTCACCATGG
ACCCGTCAGTGTCCTCCGCAGGCAAATTCTCTTTGCCATCGGTCCAACTTGTCGGCTCATTCTCTCTAGAACCTGCAGAAACCAAAACAGTACCTCATTA
GGAAAAAAAATGCGGTGGTGATATGGTGTAAATGAAGCCACAGAGGAAAGTAAAACTAGGAGATTGGAAATATCTCTACCCGAACTGTCAGACATCTCTC
AGACAGTAAGCTGACAGAAAAAAGAAGTAACGCAATTGTAAAGTCATTAAAACCAAGTCAAAGGGTATGGGAATAAATGATTCTACAGTTATATGAGAAC
TAAAGGCAGCAGCTCTGTTGATTTCCTATTTATCACAGTCCACTAGACAATCATGTAGAGTAAATTGTGCCAAGAGTGTAATACTATTGTTCCGATGGAG
AGAAGAGCCTATAATTAGCTATTCAGGAAATTTCCAAAAGGATCTTTTGTAGAAAGGGGTCTGACGATATTGGCAGAGGGCAGTGGTTATTTTTGTTAAA
TTTATGTACAGAAATAGAAAAGCCAAATGTTTATGCTAACTTGCTAATTTCAGTCAAAAACTCAGAAGTTCAGTTTTTGTCTAATCCACATGTTTTTCTG
GTATAGTGGCCTTTAAAATTTTGATTACTCTAACCATTTCAGGCACTCCCATAGCTTCAGTACACATAGGAAACAGTGGCGTAAGATACAGAAAAACAAC
TATGCTGCTGAGGATGTGCGCCTTGAAATTCTTCCCCTTCTAGCTCTAAATCATGTTATGATATTCAATCACCCGTGAGAACATATTCTCAGCAGTTTAC
AATATTTGGCCTAAGGAAGCAGTCTAAATAAAACAATCCGCAGATTTTACAGAATATCATGTTGAGTGATGTGTTGAATGCAAAATTAGTCAAAATTTTC
AGTTAAATTGATTCTAAGAAACAATATATACAGTTTGGCAATTGGAGATGGAACATGAGAGTGGTTCATCAATCCTATTGGGTTTAATAGTTGCTTCTGG
TTGGATATAAAATATAGCATCAAGACGTATCCTCTCACAACTTTTAAGTACTATAGTTTCGAAAATACAGTTACACCACTACGAACGGAAACATATTAAA
CAATACACACACTAAATATCCGCTTTATGAAAATGAATTTCAATATTTTTCTAGCCCTTCCAACGTTGCATTTGGCTAAAATTGTATTATTATAGATGAA
AGGTCATTTAATAAATGGTTATATTTCAACA