« Back to Oryza brachyantha search


Detailed information on CNT30550605


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370040Oryza brachyanthaOryza glumipatula22.3736.7986.14202reverse complement
CNT30109079Oryza brachyanthaOryza longistaminata18.7220.7988.76169reverse complement
CNT30575698Oryza brachyanthaOryza barthii17.0520.0389.61154reverse complement

Expression of CNT30550605

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MRKKHQNMVVVVKLRPCLVSKFFLKNITSIFWTSIKHR*

>peptide 2 (33 aa)
MFRFIIRKINGASLALVSSCLPNKRRQVRVWSL*

Sequence

>CNT30550605
AGTTTCAATTATGCTTTGATTAGGGTTTAAATACTTAGCTACTTGAGGGCTTTGTGAATCAATTTGTCTCCATTGTTAGTGTAAACAACCATATACAAGT
ATTTACTCCATTTACTATATCTTAACGTGCCTTGCACGTGCACACTAACTAGTAATGAACAAAATTCGAGTATAGGAGTTTATTGTTAGGCGATCAATCA
TCATTTAAGCCTAATCCTTCGATTTTGTTTTATTTTGCTTTCATTCATCATGTCCTCGTATTTATGTTTTTTTTATTTTGTTGCACAAACATATTATATT
TAGAAGTTTGTTTTGGAAGGACATAGAGAAACATATTTAGAAGTTTGTTTTGGAAGGACATAGAGAGTACTAGTTTAGTCTATGTTCAGATTCATCATTA
GAAAAATTAACGGTGCGAGTTTAGCTTTAGTCTCCTCCTGCCTGCCAAACAAAAGAAGGCAAGTTCGAGTCTGGTCGTTGTAGTAGTGGAACAGCTACAG
TAATTAACCCATATTTGTTAGATGAGGAAAAAACATCAAAACATGGTAGTAGTAGTAAAACTCAGGCCTTGTTTAGTTTCTAAATTTTTTCTTAAAAACA
TCACATCGATTTTTTGGACATCTATTAAACATAGATGAACCAAAAAATTAATTGCACAGTTATGAAAGAAATCTTGAGACGAATCTTTTGAGCCTAATTA
GTCCATGATTAGCCGCCATAAATGCTACGGTAACCAACATGTGCTAATGAAGGATTAATTAGGCTCAAAAGATTCGTTTCGCGGTTTCTAGGCTAGCCAT
GAAATTCGTTTTTTCATTCGTGTCCGAAACCCCTTCCGACATCTGGCCAAATATTTGACGTGACACTTCTCCTAAAATTTTTCTCAATCTAAACACCACC
TCA