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Detailed information on CNT30550503


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690610Oryza brachyanthaOryza sativa50.4328.0691.45234forward
CNT30185545Oryza brachyanthaSecale cereale13.3630.2488.7162forward
CNT30454582Oryza brachyanthaSaccharum spontaneum23.494.3183.49109reverse complement
CNT30353440Oryza brachyanthaEragrostis tef23.498.3385.32109reverse complement
CNT30595519Oryza brachyanthaOryza meridionalis43.9710094.12204forward
CNT30369233Oryza brachyanthaOryza glumipatula43.9766.8994.12204forward
CNT3099654Oryza brachyanthaOryza rufipogon43.9747.8993.63204forward
CNT30574824Oryza brachyanthaOryza barthii43.9797.6194.12204forward
CNT30497582Oryza brachyanthaDigitaria exilis43.9797.6187.75204forward
CNT30603436Oryza brachyanthaOryza punctata48.2888.5491.96224forward

Expression of CNT30550503

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MQSCRDTSLHNPLSLQSYRAVLDVKTKEPS

>peptide 2 (31 aa)
LIMNLIDNMVWSCVQSSFPQPEKMSTSVYFV*

>peptide 3 (33 aa)
MKRIIVAKNRKRYSSNLKKHICRVAHYSSYFLC*

Sequence

>CNT30550503
CCTCATAATGAATCTGATTGATAATATGGTCTGGTCGTGTGTCCAAAGTTCCTTTCCTCAACCAGAAAAAATGAGCACCTCTGTCTATTTTGTTTAGTCC
TGCTAGCCTGAGAACACAGCCTCCTGCCTCAAGAACAACATTCTCTGCTTTGAGAAGGACATCGGTGCGAGGGCTTTTGCCAATTGGAACAGATGGACAA
TCCTAAACAATGAAAAGAATAATTGTGGCTAAAAACAGAAAGAGGTATTCTTCGAATTTAAAGAAACATATTTGTAGAGTTGCACATTATAGTTCCTATT
TTTTATGTTAGTGGAACTCTAATAATTGAAAAGAGCCAAAAACAAGTAATACAGAAGACTTCGCAACTATAAGATGCAGTCATGTAGAGATACCTCATTG
CACAATCCATTGTCACTACAATCATACAGAGCAGTACTTGATGTAAAAACGAAAGAACCTTCAC