Detailed information on CNT30550459


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006026, E-value = 6e-28

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697761Oryza brachyanthaOryza sativa10.1920.7282.2236forward
CNT30552964Oryza brachyanthaOryza glaberrima4.2322.1785.7198forward

Expression of CNT30550459

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MCWDEAHVLGSRGAREKRTTTVVCLNLFE*

>peptide 2 (31 aa)
MTTVQPFFSNWYRPSLVNSQAEVVPKPWWVL*

>peptide 3 (31 aa)
MDARRKTISGWLTEPSWLFNYTHGIEIDAKK*

>peptide 4 (84 aa)
CAATGQYFFFPFSILPNASSPLYLLLCPPARGLVGQPGWASWAVARLAVPAPCATIKISKSALSPYKPNCSSTLATALSIEKSS*

>peptide 5 (45 aa)
MGTKVHGAGTAKVRLSKSFATTVSCVGTKLMCWVVVEHGKSVQLL*

>peptide 6 (58 aa)
LRRHRSVFFFPLLYSPERLLPSVSPSLSSCPWAGRPAGVGQLGCCSPCCSRSMCNHKN*

>peptide 7 (40 aa)
MSLLLSLLFNYCPLASDSLSGQVPGCNKPCEALLYELLML*

>peptide 8 (45 aa)
MKMKMLYVCLGDSLLELQGVELPRRWHGCQKENHQWMVDRTFMAI*

>peptide 9 (34 aa)
AAPPPVSIFFSPSLFSRTPPPLCISFSVLLPVGW*

>peptide 10 (36 aa)
MTRYHVYHLHDSGNSIIKHEVIPIPEIGVPQSETPC*

Sequence

>CNT30550459
GCTGCGCCGCCACCGGTCAGTATTTTTTTTTCCCCTTCTCTATTCTCCCGAACGCCTCCTCCCCTCTGTATCTCCTTCTCTGTCCTCCTGCCCGTGGGCT
GGTAGGCCAGCCGGGGTGGGCCAGCTGGGCTGTTGCTCGCCTTGCTGTTCCCGCTCCATGTGCAACCATAAAAATTAGCAAGTCTGCTTTGTCTCCCTAC
AAACCAAACTGCAGTAGTACGTTAGCCACTGCTCTGAGTATAGAAAAATCCAGCTAATTACTTTCTCTCTTCTAAAAATATTATTCCTGGAAATTAGCTA
CTCCTTGAATTAAATTAGGAATTTCCTCCCTTTTAACCCTTGTTTTAGTTCCAATTAATCTAGCAATTTTTTTTCGTGAAGCTTAGAGCTAAACTAGTTT
AAATCTTTCGCCTCCTGGACCAAAACCGTATCCATAATTTCTCGGCCACATTAATTCTGGACTTGCGAGATACTTCGGCTAACTGAAAAATTTCCATTAT
TCACTTGACCACCCCGAGACCTATATTTATGTCATGACTATCGACCCTCCGTTTTATCAGATTTTGTAGTCGTGAACGAATTGGGCGAGGGGCCAAATTC
GCAGGACTTCGAGCATGGCAAGTCATCACCCCCATTGAACATGTTGTACCTATATTGAGAAAATGTTTTCTTTATTTAAAATTACATGCAGAACAAGTAG
AGACCCACTTTAGTTAGATACAACCTGTCATATGTTTGATTACCGTGAAACCTTTGTCGCCTCATGTTGCAATTATAATCTAGTCAATTGATGACATTGC
TTAGCGATGCTATTAGCTGCATTTCATTCAATATTACACTTTTGAAATATTTATGATGATGTTGAGACATTACTCAGTGGGAGTAATTGCATGATAGCAG
GTGGAGATATGAGCGCCACCCGGCCAGGTTGTGAATGAGTTGTTAAGATAAAAACTGTTTTCGATCGGGGCGGAATGGTGAGAATATGGGTGGTTCTAGG
GAATGGTTAGCCCGCCCTGATCAGTTAAGGACCGAGCCATGCAGCTATACATGAAATGACCACCGTACAACCGTTTTTCTCGAATTGGTATAGACCTAGC
TTAGTAAATAGCCAAGCGGAGGTGGTGCCCAAGCCGTGGTGGGTCTTATGAGTGCAAGTAGACAGAAAGCCTATTGCACAGGGGATGACCGGGTAGGTTA
GTGCCAGTGAGTTGTGATGTGTTGTGTTGTGTTTATTGGTTTACTCCTCCCTTGTGAACGTCAGAACTCTCCTCACTGCTAGTAAAGGACGTCTAGAGTG
CAATGGGGACTAAAGTTCATGGAGCGGGCACTGCCAAAGTAAGGTTATCGAAAAGCTTTGCCACGACTGTCTCATGTGTTGGGACGAAGCTCATGTGTTG
GGTAGTCGTGGAGCACGGGAAAAGCGTACAACTACTGTAGTGTGTTTAAATCTATTCGAATAGCCGCGCTCTCGGATATGAGCATCGGGACATGGCATAC
ACATGGCTAGACTCATAAAACCTAAAAGATGAGTATGAGATGAAAATGAAAATGTTATATGTGTGTCTAGGTGATTCACTCCTTGAGTTGCAAGGGGTTG
AATTACCTAGAAGATGGCATGGATGCCAGAAGGAAAACCATCAGTGGATGGTTGACAGAACCTTCATGGCTATTTAATTATACTCATGGTATAGAAATTG
ATGCTAAAAAATAGGTCTTGTGAAAACTATTTGTGAAAGCTGCTTTTATGCAAAAGAACTCTATAAGCCTCCTTGTTATAACCATGCATGTGCATATTTT
CGTGGTGACTTGTTGAGTACTCCGTACTCACCCTGCTTTGCTCACTATCATTGTTTGAGGAAGACTCAGTTGCAGACCCTTACGAGTGCTTCGAGGACCT
CACTAAAGAAGAAGACGCGTAGTGGTGCCTTGCCTTCCAGTTGTCGCCTGTGGTGTATCGCCGCTTAGATGTCGCTACTTTTATCGCTTCTGTTTAATTA
TTGTCCTTTAGCTTCAGACTCTTTATCTGGCCAAGTGCCTGGTTGTAATAAGCCTTGTGAGGCACTGTTGTATGAACTACTGATGCTATGACTCGATATC
ATGTGTACCATCTACATGATTCAGGGAATAGTATAATTAAGCACGAGGTAATCCCGATACCTGAGATCGGGGTTCCACAGTCCGAAACCCCTTGCTGAAG
TGGGATCTCTTGGGTCGCACCCCACAGATCGACCAGCTGATTAATCAGCTCTACCGTGAGGCTGGCACTGTTATTTAGCTTGAGGTCAGCGATCCAGGCG
TTATTTGTAATGCCTT