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Detailed information on CNT30550410


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30457622Oryza brachyanthaSaccharum spontaneum23.8614.982.9894forward
CNT30363435Oryza brachyanthaSorghum bicolor23.865.1684.0494forward
CNT30107539Oryza brachyanthaOryza longistaminata44.927.5792.66177forward
CNT3099869Oryza brachyanthaOryza rufipogon44.9228.8793.22177forward
CNT30574797Oryza brachyanthaOryza barthii44.9214.6392.66177forward

Expression of CNT30550410

Peptides detected in this lncRNA

>peptide 1 (29 aa)
AAATATAAMLALHPRGDDAPALLPGSDPV*

>peptide 2 (39 aa)
PPLPPPPPCLLFIPVVMMLLLFSLALIPSRNCTDNPELQ*

Sequence

>CNT30550410
GCCGCCGCTACCGCCACCGCCGCCATGCTTGCTCTTCATCCCCGTGGTGATGATGCTCCTGCTCTTCTCCCTGGCTCTGATCCCGTCTAGAAACTGTACT
GACAATCCCGAACTTCAGTAAGTAACAACGAAATAAGAACGCCTGATGGTCAGGCAGGTGGCTGGTCCCTCAGGAGAACTTCTGTTCTACCTCAGGCCTA
GGTGAACCATGGTTGTGAAGTGAAGACTCGGAAGAAAGAATGAACAAATGAGTGTTAGCTAGGGATTCCTGCTGCTGAAGGATTTCCAGGAGTTTTTTGA
GCCTGTGGAAAGCTGTAGAGTAGTAAGCCGGCGGTCAGCACCGCGGCGCCTGCAACAAAGCCAGGAGGGAGAGTAGACGCCACACCAATGTACG