« Back to Ipomoea triloba search


Detailed information on CNT30549690


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 1e-21

BLAST vs NONCODE:
NONBNAT006984, E-value = 4e-31

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696576Ipomoea trilobaOryza sativa44.2941.2483.87186forward
CNT30522472Ipomoea trilobaSetaria italica39.0529.8784.76164forward
CNT30504865Ipomoea trilobaNicotiana attenuata4032.8184.52168forward
CNT3092650Ipomoea trilobaSolanum tuberosum24.2926.5687.25102forward
CNT30178595Ipomoea trilobaSecale cereale44.2931.2188.71186forward
CNT30285178Ipomoea trilobaTriticum aestivum44.2939.2487.1186forward
CNT30219776Ipomoea trilobaHordeum vulgare27.8627.7986.32117forward
CNT30394714Ipomoea trilobaTriticum turgidum44.2942.3784.95186forward
CNT30563984Ipomoea trilobaActinidia chinensis35.4871.6383.22149forward
CNT30553196Ipomoea trilobaOryza glaberrima44.2933.3384.95186forward
CNT30435717Ipomoea trilobaAegilops tauschii44.2930.6487.1186forward
CNT30239990Ipomoea trilobaAvena sativa44.2930.989.25186forward
CNT30656490Ipomoea trilobaTriticum dicoccoides44.2930.186.02186forward
CNT30135596Ipomoea trilobaLolium perenne44.5250.1386.1187forward
CNT3015042Ipomoea trilobaZea mays44.2931.4283.87186forward
CNT30679384Ipomoea trilobaTriticum urartu44.2930.6986.56186forward
CNT30720165Ipomoea trilobaTriticum spelta32.6229.2186.86137forward
CNT30596905Ipomoea trilobaOryza meridionalis31.4321.7184.85132forward
CNT30148252Ipomoea trilobaBrachypodium distachyon44.5246.1783.96187forward
CNT30577790Ipomoea trilobaOryza barthii31.4330.9184.85132forward
CNT30496126Ipomoea trilobaDigitaria exilis44.2927.3583.87186forward
CNT30117573Ipomoea trilobaOryza nivara44.2933.784.95186forward

Expression of CNT30549690

Peptides detected in this lncRNA

>peptide 1 (41 aa)
RLGDPLDVVAKHLPVTLGSSLAQSLASLSAAGHFCKVKEEI*

>peptide 2 (32 aa)
MRPEIRFTPPLRARRRMAGLVIPWMLSRSTFL*

Sequence

>CNT30549690
CGGCTTGGTGATCCCCTGGATGTTGTCGCGAAGCACCTTCCTGTGACGCTTGGCTCCTCCCTTGCCCAATCCCTTGCCTCCCTTTCCGCGGCCGGACATT
TTTGCAAAGTGAAGGAAGAAATCTAGGGTTTTGAATTTGTGGGGTGAGAGGTAAAATGGACAAGAAGATTTTGAGGACTCCCCTGGTCTCCTCGTAGATG
AGGCCGGAGATACGCTTCACGCCTCCTCTACGAGCCAGACGGCGAATGGCCGGCTTGGTGATCCCCTGGATGTTGTCGCGAAGCACCTTCCTGTGACGCT
TGGCTCCTCCCTTGCCCAATCCCTTGCCTCCCTTTCCGCGGCCGGACATTTTTGCAAAGTGAAGGAAGAAATCTAGGGTTTTGAATTTGTGGGGTGAGAG
GTAAAATGGACAAGTAGATT