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Detailed information on CNT30547574


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000778, E-value = 2e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674834Ipomoea trilobaSetaria viridis61.4134.0187.61218forward
CNT30316236Ipomoea trilobaCorylus avellana27.3221.1393.8197forward
CNT30512729Ipomoea trilobaJuglans regia69.323.9187.8246forward
CNT30276060Ipomoea trilobaChenopodium quinoa28.1715.7794100forward
CNT30379936Ipomoea trilobaManihot esculenta52.3955.6988.71186forward
CNT30405823Ipomoea trilobaBeta vulgaris58.8746.4483.73209forward
CNT30488117Ipomoea trilobaOlea europaea96.970.4988.95344forward
CNT30711584Ipomoea trilobaGlycine max49.324.8688175forward
CNT30191304Ipomoea trilobaSecale cereale68.1718.686.36242forward
CNT30300473Ipomoea trilobaTriticum aestivum54.6520.0486.08194forward
CNT30224354Ipomoea trilobaHordeum vulgare67.8946.4485.48241forward
CNT30391299Ipomoea trilobaTriticum turgidum65.3542.1885.78232forward
CNT30510505Ipomoea trilobaSolanum lycopersicum47.3215.4792.26168forward
CNT30552635Ipomoea trilobaOryza glaberrima68.1723.3186.36242forward
CNT30441158Ipomoea trilobaAegilops tauschii68.1731.8885.12242forward
CNT30313757Ipomoea trilobaCamelina sativa32.9613.3488.03117forward
CNT3059659Ipomoea trilobaArabidopsis lyrata2016.3687.3271forward
CNT30135610Ipomoea trilobaLolium perenne47.0419.7487.43167forward
CNT3014085Ipomoea trilobaZea mays43.9425.5787.82156forward
CNT30605685Ipomoea trilobaGossypium raimondii54.9325.5286.67195forward
CNT30684236Ipomoea trilobaTriticum urartu65.3528.2286.21232forward
CNT30596122Ipomoea trilobaOryza meridionalis34.3717.6386.89122forward
CNT30359537Ipomoea trilobaLactuca sativa29.0115.6386.41103forward
CNT30369654Ipomoea trilobaOryza glumipatula68.1727.586.78242forward
CNT30107537Ipomoea trilobaOryza longistaminata45.3517.5288.82161forward
CNT30100253Ipomoea trilobaOryza rufipogon68.1721.9686.36242forward
CNT30575129Ipomoea trilobaOryza barthii58.0325.3186.41206forward
CNT30497701Ipomoea trilobaDigitaria exilis58.0363.3885.92206forward
CNT30116094Ipomoea trilobaOryza nivara68.1727.586.36242forward
CNT30604019Ipomoea trilobaOryza punctata40.2842.3187.41143forward

Expression of CNT30547574

Peptides detected in this lncRNA

>peptide 1 (30 aa)
HKLQSRYLSCFLQPKHLPSKPTGTQLQQNP*

>peptide 2 (39 aa)
TNFKADTSHVFFSQSTFLRSPLEPSYNRILNFIQPKHLP*

>peptide 3 (51 aa)
MFGPVVSGPKHQIFLARSLSQPNSSDSIFERTLGSSLGPIRPSSIASARPSS

>peptide 4 (90 aa)
QTSKQIPLMFSSAKAPSFEAHWNPATTESLISFSQSTFLRSPLESSYNRILNFIQVLNSLTHINNHVWPSCLRTKAPNFLSKILIPTKFF*

Sequence

>CNT30547574
CACAAACTTCAAAGCAGATACCTCTCATGTTTTCTTCAGCCAAAGCACCTTCCTTCGAAGCCCACTGGAACCCAGCTACAACAGAATCCTTAATTTCATT
CAGCCAAAGCACCTTCCTTAGAAGCCCACTGGAATCCAGCTACAACAGAATCCTTAATTTCATTCAGGTACTGAACTCCCTTACACATATCAACAACCAT
GTTTGGCCCAGTTGTCTCAGGACCAAAGCACCAAATTTTCTTAGCAAGATCCTTATCCCAACCAAATTCTTCTGACAGTATCTTTGAACGAACTTTGGGG
TCATCTCTTGGTCCAATACGACCATCATCAATAGCCTCAGCAAGACCTTCCTCCA