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Detailed information on CNT30544510


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678839Brassica napusSetaria viridis55.7565.1195.18892forward
CNT30519050Brassica napusJuglans regia67.3895.8296.661078forward
CNT30373968Brassica napusArabidopsis thaliana43.6945.2799.57699forward
CNT30200729Brassica napusPisum sativum67.1244.1697.021074forward
CNT3048154Brassica napusPrunus dulcis65.3199.6296.841045forward
CNT30285964Brassica napusTriticum aestivum51.6970.8795.77827forward
CNT30239033Brassica napusBrassica oleracea85.31100.5297.81365forward
CNT30444212Brassica napusAegilops tauschii56.1269.0295.43898forward
CNT30206557Brassica napusHelianthus annuus51.2538.0296.95820forward
CNT30365697Brassica napusSorghum bicolor5698.6893.97896forward
CNT30413997Brassica napusPapaver somniferum52.1910095.57835forward
CNT3036408Brassica napusCucumis melo66.0610097.261057forward

Expression of CNT30544510

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MIYPHHDEISKITRACRPRCELVEYISVARVRPRTSKGITDLLLPQTSLA*

>peptide 2 (55 aa)
MHPFQKSGFVARISSRITTVIRVVVTIKQTITDLMSHSQFHSLNSFILTHAWLNL*

>peptide 3 (50 aa)
VVLDFTLQHCFRTNTVSGLAKAGCLVAFSLTLFVPGFGDIRKLCVRSNQN*

>peptide 4 (43 aa)
MIRFSGLLATSQTANHPRRRDPNTSPDHSIGRSDGRCVQRAGT*

>peptide 5 (38 aa)
SRFRLYIAALLPNKHRLRVGESRLFSCIFLDTFRAGVW*

>peptide 6 (37 aa)
MFHRSQVVLFPGYDNDPSAGSPTETLLRLLLPLNDKV*

>peptide 7 (44 aa)
MTTGRINQVAFINHGKPWSCSRKHMERGNRRRLDRHLLSGDKRA*

Sequence

>CNT30544510
AGTCGTTTTAGACTTTACATTGCAGCACTGCTTCCGAACAAACACCGTCTCCGGGTTGGCGAAAGCAGGCTGTTTAGTTGCATTTTCCTTGACACTTTTC
GTGCCGGGGTTTGGTGATATCCGGAAGCTATGCGTACGATCCAACCAAAACTGAAGTCTTGGCCAAGGATGAACGCATAACCACGGAATCAGCAGGCACA
GTAAGAAACCGGCCTACCGAGAGTGATGTTTCATCGTTCTCAGGTCGTTCTGTTTCCAGGGTACGACAATGATCCTTCCGCAGGTTCACCTACGGAAACC
TTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTTTAGTGGACTTCTCGCGACGTCGCAGACGGCGAACCACCCACGTCGCCGCGATCCGAACACTTCA
CCGGATCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTT
GAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGTGTGAACTCGTTGAATACATCAGTGT
AGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCCG
TGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCAC
CACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGATTGGGTAATTTGCGCGCC
TGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTACCACCATGGTAGGCCACTATCC
TACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCAGCACTAAGGCCATGCGATCCGTCGAGTTATCATGAATCATCAGAGCAACGGGCA
GAGCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGTA
GTTACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTCGTTCATACTTACACATGCATGGCTTAATCTTTGAGACA
AGCATATGACTACTGGCAGGATCAACCAGGTAGCATTCATAAATCACGGCAAGCCCTGGTCATGTTCCCGCAAACACATGGAAAGAGGGAACAGACGAAG
ACTTGACCGTCATCTTTTGTCCGGAGACAAACGTGCTTAGCAGGACAGAATTTCTTCGAGTCACCGCCATAATCTTTCCGCAACCGAGATCCCAGCAAAC
AGCTTGTTCACCTTGGCGAACAATGCATAAATTATGCAAAGACGCAAGGATCACAAGTGCCGGCTTATGCGTTCACGACTTCCCCAATGAAGGAGATGCC