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Detailed information on CNT3054398


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640134Amborella trichopodaNymphaea colorata22.1622.0984.21152forward
CNT30547410Amborella trichopodaIpomoea triloba20.9927.1281.94144forward
CNT30512774Amborella trichopodaJuglans regia62.134.1379.11426forward
CNT30373037Amborella trichopodaArabidopsis thaliana23.918.0585.37164forward
CNT3019595Amborella trichopodaCitrullus lanatus20.4125.2382.14140forward
CNT3071371Amborella trichopodaQuercus suber20.8549.8383.92143forward
CNT30636551Amborella trichopodaCapsicum annuum26.6827.7380.87183forward
CNT30192963Amborella trichopodaSecale cereale16.4721.1684.96113forward
CNT30224842Amborella trichopodaHordeum vulgare61.8196.880.9424forward
CNT30510528Amborella trichopodaSolanum lycopersicum62.3933.2378.74428forward
CNT30143750Amborella trichopodaMedicago truncatula34.430.8181.36236forward
CNT30441049Amborella trichopodaAegilops tauschii26.6848.4185.25183forward
CNT30665536Amborella trichopodaTriticum dicoccoides45.0446.8979.29309forward
CNT30309902Amborella trichopodaCamelina sativa31.4919.0582.41216forward
CNT30263748Amborella trichopodaBrassica rapa36.5934.5382.87251forward
CNT30612508Amborella trichopodaArabis alpina30.478.2384.21209forward
CNT30445994Amborella trichopodaSaccharum spontaneum61.5229.6381.75422forward
CNT301916Amborella trichopodaZea mays15.626.2988.79107forward
CNT30211766Amborella trichopodaHelianthus annuus23.0367.2383.54158forward
CNT30716253Amborella trichopodaMalus domestica golden35.5718.483.61244forward
CNT30361828Amborella trichopodaSorghum bicolor58.7577.880.89403forward
CNT30705326Amborella trichopodaPrunus avium61.9533.0780.24425forward
CNT30119815Amborella trichopodaCitrus clementina41.8462.5382.58287forward
CNT30557952Amborella trichopodaPanicum hallii29.5924.9181.28203forward

Expression of CNT3054398

Peptides detected in this lncRNA

>peptide 1 (56 aa)
LWITVPNSICINIIKWTLIKVLNTISLGLCRGREMEYHHLQQSFARRKPCLHDPLH*

Sequence

>CNT3054398
CTCTGGATCACAGTTCCTAATAGCATTTGCATAAACATCATCAAGTGGACCCTCATAAAGGTTCTCAACACGATATCTTTGGGCCTTTGCAGGGGAAGGG
AGATGGAATACCATCATCTCCAACAAAGCTTCGCTCGCAGGAAGCCATGTTTGCATGACCCTCTTCATTAGGGCCTTGCCCACAAGTTCCTTCTCATCAG
CCTTCATTGAGACCCCAAGCTTTTGAAGCATAGGCCAAAGCTTAGTTTTCTGGTCATTCATGCATGTGTTGATTATTTGCTTAATCGGTTCATAACAAAA
CTGAACGAAACCCCTCTTGCAAGTGGGGGATCCAGTGTTCTTGCCGGTCCACTTCTTGGTGGCAGGGTCGAAGTAGTTCTCACCCCAAAGCCTCTCCATC
ATCTTAGCCTCATCAACACCAAACTTGGAGCTCAAGAAAGCATCGGTCCATCTTGTTCACAGTGAGAACTGGCCTGATCCTCTCACCAAGTGCTTGTCTA
AGCACTGTTTCAGTTTGGACACAAACACCCTCAATACAATCAACCACAACAAGAGCACCATCAGTGATTCGAAGGGCGGCAGTAACCTCAGAGGAGAAGT
CGACGTGCCCTGGTGAATCAATAAGATTGATGAGGTACTCATTGCCATTTCTTTCCCCCTTGAAGCTCTTGAGTGATTCTTCGGTC