Detailed information on CNT30543403


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30235516Brassica napusBrassica oleracea20.7437.0582.26186forward
CNT3073470Brassica napusBrassica juncea28.3232.7394.09254forward

Expression of CNT30543403

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MIIREASKELEICSSPVILIIQQCICRMENIG*

>peptide 2 (34 aa)
MTATIKITFFSAFNHLWYFRVNDHSRGIKGIRDL*

>peptide 3 (96 aa)
MQNGEYRLSFPKCSMVFLNHYRVAPVKKRGMVCCAISSSCRPNMEISDVAPCSNRKKASFTLNDCLHSHQPRRIPWFLPLVECFVSKNVEPSHEPS*

>peptide 4 (36 aa)
MNHLSGVHWLQVVDGDGLFIRNNRCFDLLFRSHLFV*

>peptide 5 (46 aa)
MGMACSLETIAVLICFLEAICLFDGMSLFRKKRRYLYKEVAMGRVV*

Sequence

>CNT30543403
GTTAAATCAGACATCTAATCTAAGTTCAGATGTAATGGTGGTGCTGCTCCGTGGTGATACAATTAGCTGAAGAAATAAGTTTATTAAAAGTGTAGCATTA
CACTTGCGTCTTACAAAGAAAGATAGGAAGGGATTGAACATGAACCAATACTACCACCCAAAAAGATAAGTATCTTTTTATACTTTACCAGAATTTAAAT
ATATAGTAACTTACTGTTATACTGTGTTCTTTTGACAGGACAATATGCGTAGTACATGGTACATCCAAATGGAAATTAAGAAGCAAATTGATGACAGCGA
CTATTAAGATAACTTTCTTCAGTGCATTTAATCACCTCTGGTATTTCCGGGTTAATGATCATTCGAGAGGCATCAAAGGAATTAGAGATTTGTAGTTCTC
CTGTCATTTTAATAATCCAGCAGTGTATATGCAGAATGGAGAATATCGGTTAAGTTTCCCCAAATGCAGCATGGTATTCTTGAATCACTATAGGGTGGCG
CCAGTCAAAAAGCGAGGCATGGTTTGTTGTGCGATAAGCTCCTCCTGCAGGCCTAACATGGAAATTTCGGATGTAGCGCCATGCTCCAACCGGAAGAAGG
CTTCCTTTACTCTCAATGATTGCTTACATTCTCATCAACCAAGACGAATTCCATGGTTTCTCCCCCTAGTTGAATGTTTTGTTTCCAAGAATGTAGAACC
TTCGCATGAACCATCTTAGCGGTGTGCACTGGCTTCAAGTTGTTGATGGGGATGGCTTGTTCATTAGAAACAATCGCTGTTTTGATTTGCTTTTTAGAAG
CCATTTGTTTGTTTGACGGTATGAGTTTGTTTAGGAAGAAGCGTCGTTATTTATATAAGGAAGTGGCGATGGGGAGAGTTGTTTAGGTTTTGAGGAA