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Detailed information on CNT3054174


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39255|SKP1A_ARATH, E-value = 1e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671810Amborella trichopodaSetaria viridis10.9636.0386.5289forward
CNT30535942Amborella trichopodaEucalyptus grandis15.7627.4783.59128forward
CNT30277964Amborella trichopodaChenopodium quinoa16.0121.784.62130forward
CNT30403855Amborella trichopodaBeta vulgaris11.4525.5588.1793forward
CNT3097013Amborella trichopodaSolanum tuberosum12.0722.0785.7198forward
CNT30259882Amborella trichopodaBrassica rapa12.8127.2382.69104forward
CNT30135602Amborella trichopodaLolium perenne16.1323.3985.5131forward
CNT30592895Amborella trichopodaEragrostis curvula14.923.3181.82121forward

Expression of CNT3054174

Peptides detected in this lncRNA

>peptide 1 (35 aa)
GGKRDPLSNYKQHMKCLDKESILYSYKHQEDFLLH*

>peptide 2 (80 aa)
MSATVWQVSVPALDLLLLGLILCDFLSVDMVLAILYNLSKDLARNIRERDAITCTIIFNHMLNGLRFYCNALFDLKNLSI*

Sequence

>CNT3054174
GGGGGGCAAGAGAGACCCTTTGAGCAACTACAAACAACACATGAAATGCCTAGATAAAGAGAGCATTCTCTACAGCTATAAACATCAAGAGGACTTTCTT
CTGCACTGAAAACCTAAACAGTATTGTCCCCACAAATAGAAATTGCAGCAAAAGGATGGTTCTATTCACCAGCACATTGAAAAGTCACTACAAATTAAAA
GTACCCTTGTCCAAAAACAGCAGTAGATGAACAACAGCGGTATGTAAAATATGTATAAACAAACAAGATAAGCTTTTCTTCTCTACTCGAAGGCCCACTG
GTTCTCCCTCCTGACCTCTTCCTCTTCCTCTGGTGTGAAATCGTTCTTAATATTGAAGGTCTTCCTAATCTCCTCAGGAGTCTTGCCCTTGATCATGTCG
GCGACAGTTTGGCAAGTCAGCGTCCCAGCTCTTGATCTCCTCCTCCTGGGTCTTATCCTCTGTGACTTTTTGAGCGTCGACATGGTACTTGCAATACTCT
ATAACCTTAGCAAGGATCTTGCTCGAAACATTCGGGAGAGGGATGCCATTACCTGCACAATCATCTTCAATCATATGCTTAATGGTCTGAGATTCTACTG
CAACGCTCTCTTCGACCTCAAAAACCTCTCCATCTGAGCTTTTCAAGGTCACTTTCTTCTCGTCCTTCGACATATTCGCTTCCCGGCAACTACAGCGAGA
GAAACCCTAATTCTCCTTAATTATTGATCCTTAAAATCTCCCTTGCAATCTCTCCCTCTCTCTCCTCTCTTCTCCCACCAGGGCACCAAAATCTAATCTG
GTTCGCCATCAC