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Detailed information on CNT30541340


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372815Brassica napusArabidopsis thaliana32.6674.6489.95209forward
CNT30268339Brassica napusChenopodium quinoa27.521.6280.68176forward
CNT30379481Brassica napusManihot esculenta2058.4586.72128forward
CNT30524716Brassica napusPhaseolus vulgaris27.6622.6185.88177forward
CNT30628639Brassica napusVigna unguiculata21.2519.1385.29136forward
CNT30196808Brassica napusPisum sativum18.9151.0583.47121forward
CNT30490066Brassica napusOlea europaea26.0918.7280.84167forward
CNT30711851Brassica napusGlycine max30.3116.8384.02194forward
CNT3093146Brassica napusSolanum tuberosum16.2530.0684.62104forward
CNT3088037Brassica napusVigna radiata22.510.7188.19144forward
CNT30509382Brassica napusSolanum lycopersicum30.6330.6787.24196forward
CNT30146657Brassica napusMedicago truncatula27.516.0482.95176forward
CNT30244006Brassica napusAvena sativa15.3124.0282.6598forward
CNT30648504Brassica napusRosa chinensis28.442580.77182forward
CNT30215929Brassica napusHelianthus annuus35.3123.9780.09226forward
CNT30622203Brassica napusCajanus cajan34.5325.6783.26221forward
CNT30356626Brassica napusLactuca sativa32.6622.2384.69209forward
CNT30572796Brassica napusVitis vinifera17.6621.484.07113forward
CNT30119544Brassica napusCitrus clementina33.7518.7883.33216forward
CNT30726265Brassica napusLupinus angustifolius34.3832.9881.36220forward
CNT3065586Brassica napusSelaginella moellendorffii9.5325.4288.5261forward

Expression of CNT30541340

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MRCLFDTTSVVNGDNIERRVFTTVPASQEVPADPTESIDGYL*

>peptide 2 (39 aa)
MCFPAPSLSTNTPVPSMTKSMPSSLTIITRYVHKSFRSI*

>peptide 3 (86 aa)
MIFPSTERAESPEGLTSASKIPRVESYLRRCVACLTPPVSLMAITSRGESLRPCQHLKKFLPILPNPLMATFSLASVTPFLYPPLLP

>peptide 4 (77 aa)
LVKNLDEWCETVSGTRSIADDCVFMAVKFSIDTNDISWDITFTRCSDQNLLGSSLNVLSSTFSVYKHSGSFDDQVNA*

Sequence

>CNT30541340
TTCTGGTCAAGAACCTTGACGAATGGTGCGAGACAGTTAGTGGTACAAGAAGCATTGCTGATGATTGTGTCTTCATGGCTGTAAAGTTCAGCATTGACAC
CAACGACATAAGTTGGGATATCACCTTTACCAGGTGCAGTGATCAGAACCTTCTTGGCTCCAGCTTGAATGTGCTTTCCAGCACCTTCTCTGTCTACAAA
CACTCCGGTTCCTTCGATGACCAAGTCAATGCCTAGTTCCCTAACCATCATCACCAGATACGTTCATAAAAGTTTTAGATCAATTTGAAAAAAATCAAAC
AATCTTTTAAGTGTTGTTTTTTTTGTTTGACTTACCCCCAGGGGAGGTTGGATGGGTTACGGTCAGAAACAATCTTGATGATCTTTCCATCAACGGAGAG
AGCGGAGTCTCCTGAAGGCTTGACATCAGCATCGAAGATTCCAAGAGTGGAGTCGTATTTGAGGAGATGCGTTGCTTGTTTGACACCACCAGTGTCGTTA
ATGGCGATAACATCGAGAGGAGAGTCTTTACGACCGTGCCAGCATCTCAAGAAGTTCCTGCCGATCCTACCGAATCCATTGATGGCTACCTTTAGCTTGG
CCTCGGTCACTCCTTTCCTGTATCCACCATTGCTTCCCAT