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Detailed information on CNT30540845


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SHE8|PSAF_ARATH, E-value = 6e-68

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641545Brassica napusNymphaea colorata20.4611.4184.5497forward
CNT30618190Brassica napusSesamum indicum20.6817.7584.6998forward
CNT30562394Brassica napusActinidia chinensis20.0415.0883.1695forward
CNT3075737Brassica napusBrassica juncea22.3612.594.34106forward
CNT30716553Brassica napusMalus domestica golden23.8417.285.84113forward
CNT30620828Brassica napusCajanus cajan23.2150.2384.55110forward
CNT3038681Brassica napusCucumis melo24.4728.9383.62116forward
CNT30174403Brassica napusVigna angularis32.722.381.29155forward

Expression of CNT30540845

Peptides detected in this lncRNA

>peptide 1 (66 aa)
NDDLFHRWFLLITNSYQVASPHPPDPSRNVEEQKSRCYELSPMPLVSVHYQVCKSRSTLRSVELER*

>peptide 2 (31 aa)
MRGGWKREPPPLRMPSWTCCHRWSRRISRWI*

>peptide 3 (31 aa)
MEERATAAENAFMDLLSSVEQTNLAVDLGKD*

Sequence

>CNT30540845
CAATGATGATCTCTTTCATCGCTGGTTTCTTCTCATCACTAATAGCTATCAAGTAGCTTCTCCCCACCCACCCGATCCATCCCGCAATGTAGAGGAACAA
AAGTCCAGGTGTTATGAACTCTCCCCAATGCCTCTGGTCTCCGTTCACTATCAGGTGTGCAAGAGCAGGAGCACTCTCAGGAGCGTAGAGCTTGAGAGAT
GATTGGAGCTTCTTGATCTGTTGCTTCTCCCTCTTGGCGAACTGTTTCGACTCCTTGCAAGGGGTTAGGCCCGAGATATCAGCGGCGGCTGGCATCGGAG
ATGAGAGGAGGATGGAAGAGAGAGCCACCGCCGCTGAGAATGCCTTCATGGACTTGTTGTCATCGGTGGAGCAGACGAATCTCGCGGTGGATTTAGGTAA
GGATTGAGTGAGAGTCTTCTTGTTGGGTCTCGGGTTGAGGACGAGGTTCGTCGGGATCGTGAGAGACATTGCTT