Detailed information on CNT30539975


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670880Brassica napusSetaria viridis11.4942.9984.7892forward
CNT30518041Brassica napusJuglans regia28.0941.2879.56225forward
CNT30375708Brassica napusArabidopsis thaliana50.8136.2188.45407forward
CNT30632979Brassica napusCapsicum annuum21.628.0882.08173forward
CNT30559187Brassica napusActinidia chinensis21.636.6582.66173forward
CNT30666984Brassica napusTriticum dicoccoides26.3421.7380.09211forward
CNT30314096Brassica napusCamelina sativa50.5682.3285.43405forward
CNT3075396Brassica napusBrassica juncea18.7332.89100150forward
CNT30611984Brassica napusArabis alpina49.9460.2484.25400forward
CNT30649933Brassica napusRosa chinensis15.2355.7186.89122forward
CNT30717698Brassica napusMalus domestica golden18.624.1585.23149forward
CNT30477457Brassica napusArabidopsis halleri25.7262.2488.35206forward
CNT30705704Brassica napusPrunus avium35.7114.1182.17286forward
CNT3031674Brassica napusTheobroma cacao19.7344.1384.18158forward
CNT30323777Brassica napusAsparagus officinalis16.4835.7781.06132forward
CNT3036618Brassica napusCucumis melo22.3535.6683.24179forward
CNT30115229Brassica napusEutrema salsugineum20.2235.7692.59162forward

Expression of CNT30539975

Peptides detected in this lncRNA

>peptide 1 (31 aa)
ITYCCTRTHLSSHLACPVPHRYTPSPPSTSP*

>peptide 2 (83 aa)
MRHRGEQMMRHVRVGNIVEDLVQDSVVSVNGSQSSPQPIPLGRIVVRQGRMRVLQVSDQHEETIDNQKRDSVEADHRGGRSGR*

Sequence

>CNT30539975
CATAACTTATTGTTGTACCAGAACACACCTTTCTTCTCACCTTGCCTGTCCGGTTCCACATAGATACACTCCTTCGCCTCCCTCCACATCGCCTTAACCA
CCGGCGTCCCATCGAACTGATAATACTCTCCCAGTATCGGCTTTATCGCCTTGGTAGCTTCCATCGCGTGATAATGCGGCATCGTGGAGAACAGATGATG
CGCCACGTGCGTGTCGGTAATATTGTGGAAGACCTTGTTCAAGATTCCGTAGTCTCTGTCAACGGTAGCCAAAGCTCCCCTCAACCAATCCCACTCGGAC
GAATCGTAGTGAGGCAGGGAAGGATGCGTGTGCTGCAAGTAAGTGATCAACACGAGGAAACCATTGACAATCAGAAGCGGGACTCCGTAGAAGCAGACCA
TCGAGGAGGAAGGAGTGGAAGATGAGACCGACGGTGTCGTCAAGCCACTGGTAGTCGCTGAAGGCGTGGTGGCCGCACTCGTGGGCTATGACCCAGACGC
CGGTTAGGACGCACCCTTGGCAGGCCCAGTAGAGAGGCCAGGCGAAGTAGGAGAGAGGGTGAGGGAGGAGAGGGAAGTAAGTGGTGGCGACGTAGTAGAA
GCAGGAGGCTATGATGATGTCCCAGATGAGGTAGGAGAAAGAGCGAGGGATCGAGCGTTTGAAACAGTGCGGTGGGATTGCTTTCTTGAGTTCTCCGACA
GTGAAGGGCGGTGTCTCGCAGGGTACGCGCTTGATGGTGTCGGTTTCAGACTTCTTGGAGGGAGGAGACACTTGCATTCTTCCACCTGCACCCATGTTTC
T