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Detailed information on CNT30538004


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FFD2|RGP5_ARATH, E-value = 8e-128

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30264864Brassica napusBrassica rapa89.0982.8798.25629forward
CNT30595951Brassica napusOryza meridionalis9.9232.5688.5770forward

Expression of CNT30538004

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MQQIRGFLLPIFQREVDEHELCVCNGLGIYH

>peptide 2 (60 aa)
MLRSSLSSGSLTMMRWKPEKKGLQLLRNWVRSALRAPMTMSTSFLFISDDDMFEYQVAKF*

Sequence

>CNT30538004
GTAGGAAGTGTTCCTCTGCTCTGTCTTGAGAGCTTGCGTTGGAGCGTCAAGATCAGCTAAGTTAAGCCAAAGTCCACAGGAGGCAGCGCAAGGGACACCG
CTCCTAAGGCTGAACGGGTACCCACGGACAAAGTCAGCTCCCTCGCAGTAAGGATCATAGAGGGTGTTGAAGAAGAGAGGCGTGGCGGGGTTCTCGAGGT
TGGTCACGTGCTGAGAGACAGCATCCACTAGAACTCCCTTGGGATCTTTGGCAGGGACGCAATCATCATCGATGGAGACGATGTACTTCTTTTTGGACAC
GAGGTAACCGAAGTATCTGCAGGAATAGCCTGAGAACATGGCGGCATTGGCGGCTCCGACAACTTTCTCAATGTCGGGCTTGGAGTAGACGTCAACGTCG
AAGCCTTCAGGGATGTTGAGGTCATCCTTGAGCTCAGGGTCTTTGACGATGATGAGATGGAAACCGGAGAAAAAGGGTCTCCAGCTGTTGAGGAACTGGG
TTAGGTCGGCGTTGAGAGCTCCGATGACAATGTCAACCTCGTTCTTGTTTATCTCAGACGACGACATGTTTGAATATCAAGTAGCAAAGTTCTAAGGTAA
TCTTCTGCAGAATGCAGCAGATCCGAGGCTTTCTTCTTCCTATTTTTCAGAGGGAAGTTGATGAACACGAGCTTTGTGTATGTAATGGATTGGGGATTTA
TCACGT