« Back to Eucalyptus grandis search


Detailed information on CNT30537681


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FHW7|SKP1B_ARATH, E-value = 3e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671215Eucalyptus grandisSetaria viridis6.9426.3489.0664forward
CNT30303844Eucalyptus grandisTriticum aestivum6.9425.9190.6264forward
CNT30666847Eucalyptus grandisTriticum dicoccoides6.9425.790.6264forward

Expression of CNT30537681

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MGPTPIRPYISPRSSRTIRVETPSLLSLQLED

>peptide 2 (67 aa)
MRSQRVVWSTLTNSASQALRSTCCLQYSMTIFRVRLGTLGSGISLPVHLASINCFTTCDWTATASST*

>peptide 3 (29 aa)
VDSMCKLNKYHCIPPVKDTFNFSRIHIQK*

Sequence

>CNT30537681
GGGTGGACAGCATGTGTAAACTGAACAAATATCACTGCATTCCTCCAGTAAAGGACACGTTTAATTTCTCACGCATTCACATTCAAAAGTAGCATGATTA
ACATAGTCCACAAGTGCAGATTCCAGTAAACAGAGGGAGAAAGGCGGACTGCCCATTCAGATTTGTTCGTGAGATACGCTTTGATTCAAAATTACACTGA
TTTTGCGCCAACACTCTTCCTTGTCCTCAGGGGTGGGGTATTTCTCGCTGCTCAAACTCTTAAGGATGTCCTCTCGAGTTTTCCCCTTGATCATGTCCTT
TAGAGTCAGGCATGTCAGATCCAGCAAGCCCTTGATATTTAGATAGTCTGCAGCCTGGATGAGATCGCAGAGGGTGGTCTGGTCGACTTTGACGAACTCG
GCGTCCCAGGCCTTGAGGTCGACGTGCTGCTTGCAGTACTCGATGACCATCTTCAGGGTCCGGCTGGGGACGTTGGGGAGCGGGATCTCGCTGCCGGTGC
ACTTGGCGTCGATAAATTGCTTCACGACCTGCGACTGGACGGCCACCGCCTCGTCGACATAGAACGGCTCCTTTTCGGAGCTCCGGAGGGTGATCTTCTT
CGCCGACGACATCGTCGATTCTCCGATTCCCCGCTGGCCCGGTGGCGGATTCGTGCGCCGGCTATGGGTGGGGCTGGTCTCGGATCGGGATCGGGATCGG
GAAACCCTAGCAGCCGATTTCGTCGTTCGGATAGAGAGAGAGAGTGAGTAAAAGAGAAAATATTGTCTACGTCTTGTGCTCCAGCGTCTCGAAGAAGGAG
GCAGCGAGAACACGACACGTGTCGGCATGGGTCCCACCCCCATCAGGCCATACATCTCTCCCCGGTCTTCCCGCACCATTCGCGTTGAAACTCCCTCACT
CCTCTCTCTTCAACTAGAGGAC