« Back to Eucalyptus grandis search


Detailed information on CNT30532753


BLAST search results

BLAST vs Swiss-Prot:
sp|O04006|PSAH_BRACM, E-value = 1e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693639Eucalyptus grandisOryza sativa41.5310.7583.5103forward
CNT30673198Eucalyptus grandisSetaria viridis41.5345.1883.5103forward
CNT30521234Eucalyptus grandisSetaria italica41.5314.2583.5103forward
CNT30709492Eucalyptus grandisGlycine max29.8415.6887.8474forward
CNT30591852Eucalyptus grandisMusa acuminata26.6115.8387.8866forward
CNT30241486Eucalyptus grandisAvena sativa34.6823.2486.0586forward
CNT30131217Eucalyptus grandisLolium perenne34.6817.2384.8886forward
CNT3011150Eucalyptus grandisZea mays27.828.1685.5169forward
CNT30338878Eucalyptus grandisEragrostis tef41.5313.2182.52103forward
CNT30367799Eucalyptus grandisSorghum bicolor27.8210.686.9669forward
CNT30370255Eucalyptus grandisOryza glumipatula41.5316.1783.5103forward
CNT30704201Eucalyptus grandisPrunus avium29.8428.5785.1474forward
CNT30318832Eucalyptus grandisAsparagus officinalis41.535.0584.47103forward
CNT30149479Eucalyptus grandisBrachypodium distachyon39.9225.7184.8599forward
CNT30101773Eucalyptus grandisOryza rufipogon41.5312.583.5103forward
CNT30582309Eucalyptus grandisEchinochloa crusgalli27.8215.4486.9669forward
CNT30496965Eucalyptus grandisDigitaria exilis41.5330.2983.5103forward
CNT30116717Eucalyptus grandisOryza nivara41.5312.5383.5103forward
CNT30604129Eucalyptus grandisOryza punctata40.3215.9584100forward

Expression of CNT30532753

Peptides detected in this lncRNA

>peptide 1 (50 aa)
PQLWRELWALLDWQDVTRSRGAEVSEGRTAPKDQELKQQASLGEWTRKWL*

>peptide 2 (38 aa)
MDPQMVVRGRSVGSIQVPLAGGVAQIFQVEVHALVSVLG

Sequence

>CNT30532753
CCCCAGCTTTGGCGGGAGTTGTGGGCCCTTCTTGATTGGCAAGATGTCACCCGAAGCCGTGGCGCTGAGGTAAGCGAGGGTAGAACCGCCCCCAAGGATC
AAGAACTTAAGCAGCAGGCCTCTCTTGGTGAATGGACCCGCAAATGGTTGTAAGGGGAAGGAGCGTCGGATCCATACAAGTCCCACTGGCCGGTGGTGTT
GCCCAGATCTTCCAAGTCGAAGTACACGCTCTTGTCTCCGTACTTGGC