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Detailed information on CNT30531266


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FF53|PIP24_ARATH, E-value = 2e-90

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695037Eucalyptus grandisOryza sativa47.9926.583.25203forward
CNT30676770Eucalyptus grandisSetaria viridis18.9137.9186.2580forward
CNT3044720Eucalyptus grandisPrunus dulcis29.5518.9781.6125forward
CNT30289517Eucalyptus grandisTriticum aestivum36.8828.2182.69156forward
CNT30221132Eucalyptus grandisHordeum vulgare17.0231.1787.572forward
CNT30387764Eucalyptus grandisTriticum turgidum45.6321.7682.38193forward
CNT30586754Eucalyptus grandisMusa acuminata15.3724.0789.2365forward
CNT30552571Eucalyptus grandisOryza glaberrima19.1532.0287.6581forward
CNT30436090Eucalyptus grandisAegilops tauschii49.6520.1782.38210forward
CNT30254684Eucalyptus grandisAvena sativa23.6444.4485100forward
CNT30659451Eucalyptus grandisTriticum dicoccoides45.6353.7682.38193forward
CNT3062229Eucalyptus grandisArabidopsis lyrata23.6421.7485100forward
CNT3013604Eucalyptus grandisZea mays20.336.2883.7286forward
CNT30227873Eucalyptus grandisAnanas comosus25.5317.5681.48108forward
CNT30680173Eucalyptus grandisTriticum urartu19.6234.1689.1683forward
CNT30365858Eucalyptus grandisSorghum bicolor18.221.2787.0177forward
CNT30595656Eucalyptus grandisOryza meridionalis18.223.0584.4277forward
CNT30570969Eucalyptus grandisVitis vinifera18.6828.7384.8179forward
CNT30120694Eucalyptus grandisCitrus clementina30.9753.6980.92131forward
CNT30101140Eucalyptus grandisOryza rufipogon18.229.3987.0177forward
CNT30575194Eucalyptus grandisOryza barthii15.632.287.8866forward
CNT30116611Eucalyptus grandisOryza nivara13.2427.7289.2956forward
CNT30604398Eucalyptus grandisOryza punctata62.4111.1779.17264forward

Expression of CNT30531266

Peptides detected in this lncRNA

>peptide 1 (77 aa)
LVVPSLILVVDHGSSEAPCWVYACSRYGDRGQMHHEDCKPYGQGCQHRNVGVPGVSLRIGGREHGVHQDEGADDLRP*

>peptide 2 (34 aa)
GRPKPYPCCRSRQLRSSLLGLCLFPLWGSWPDAP*

>peptide 3 (76 aa)
MPVPVMGIVARCTMKTANPMGKGANTGTWESLAFRFGSVAENTVYTRTKVPMISAPSPTPLLYPSDSSFAPPPYRV*

>peptide 4 (28 aa)
MAPRHCATMYITARTSDTLRARKRPKVTA

Sequence

>CNT30531266
CTGGTCGTCCCAAGCCTTATCCTTGTTGTAGATCACGGCAGCTCCGAAGCTCCTTGCTGGGTTTATGCCTGTTCCCGTTATGGGGATCGTGGCCAGATGC
ACCATGAAGACTGCAAACCCTATGGGCAAGGGTGCCAACACAGGAACGTGGGAGTCCCTGGCGTTTCGCTTCGGATCGGTGGCCGAGAACACGGTGTACA
CCAGGACGAAGGTGCCGATGATCTCCGCCCCTAGCCCCACGCCCTTGCTGTACCCATCGGACAGCTCGTTTGCGCCGCCACCGTACCGGGTGTAGCGCGC
CTTCTGGAACGCCTTCACCAGTCCACACCCGCAAATGGCGCCAAGGCACTGCGCTACCATGTACATCACAGCCCGAACGAGCGACACCTTGCGCGCCAGG
AAGAGACCGAAGGTCACCGCCGG