Detailed information on CNT30524082


BLAST search results

BLAST vs Swiss-Prot:
sp|P09315|G3PA_MAIZE, E-value = 4e-116

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30509382Setaria italicaSolanum lycopersicum18.0327.5480.68176forward
CNT30244006Setaria italicaAvena sativa35.4584.890.75346forward
CNT30572796Setaria italicaVitis vinifera19.2635.6184.57188forward

Expression of CNT30524082

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRGFTSNCWRQCQLGRRPSASSPTRCRTTR*

>peptide 2 (92 aa)
MTLTMSSPMTMVSEASTVEDTSEHLKSTDTSGASQTSRMPASSLAALSRNAWFTSSARVFLETCTTRQLVVQEALLMMGSSGLYWSALTPQT*

>peptide 3 (85 aa)
MSPFPGAVMSTFLAPAWMCFPAPSRSTNTPVPSMTRSTPISPHGRLLGLRSDTTLMTLPSTEMALSPTGLTSASKMPSVESYLSR*

>peptide 4 (75 aa)
CRKSIILRPWTMKNRRRERENKRNCWEFGSSISHYKLSSGKTLGKILKPRMGYYNARLHFQLLATMSARSTTLCE*

>peptide 5 (49 aa)
MAMTSSGESSRPCQQRRKLRPMRPNPLIATFSLASVGARLGPPLVPTCTR

Sequence

>CNT30524082
TGCCGGAAGTCGATTATACTCCGTCCCTGGACAATGAAAAATCGGAGAAGGGAGAGAGAAAATAAAAGGAATTGTTGGGAGTTTGGGTCCTCGATTTCTC
ATTACAAATTATCATCAGGGAAGACCCTGGGGAAAATTTTGAAGCCGAGGATGGGTTATTACAATGCGAGGCTTCACTTCCAATTGTTGGCGACAATGTC
AGCTAGGTCGACGACCCTCTGCGAGTAGCCCCACTCGTTGTCGTACCACGCGATGACCTTGACCATGTCGTCGCCCATGACCATGGTGAGCGAGGCGTCG
ACGGTGGAGGACACGTCGGAGCACCTGAAGTCGACGGACACGAGCGGGGCGTCGCAGACCTCGAGGATGCCGGCGAGCTCGTTGGCGGCGCTGTCGCGGA
ACGCCTGGTTCACCTCCTCGGCGAGGGTCTTCTTGGAGACCTGCACGACGAGACAGTTGGTGGTGCAGGAGGCGTTGCTGATGATGGGCTCGTCGGGGTT
GTACTGGTCAGCATTGACGCCGCAGACGTAGGTGGGGATGTCGCCCTTCCCTGGCGCCGTGATGAGCACCTTCTTGGCTCCCGCCTGGATGTGCTTCCCG
GCGCCCTCGCGGTCGACGAACACCCCCGTGCCCTCGATGACGAGGTCTACGCCCATCTCCCCCCACGGCAGGTTGCTGGGGTTGCGGTCGGACACGACCT
TGATGACCTTGCCGTCGACGGAGATGGCGTTGTCCCCCACGGGCTTAACGTCGGCGTCGAAGATGCCGAGCGTGGAGTCGTACTTGAGCAGGTGAGACGC
CTGCTTGACGCCTCCCGTGTCGTTGATGGCGATGACCTCGAGCGGCGAGTCGTCGCGCCCGTGCCAGCAGCGGAGGAAGTTGCGCCCGATGCGGCCGAAC
CCGTTGATCGCCACCTTCAGCTTGGCCTCCGTCGGCGCCCGCCTAGGCCCGCCACTCGTGCCGACCTGCACACGCA