Detailed information on CNT30523459


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30184327Setaria italicaSecale cereale2.3921.691.346forward
CNT30468518Setaria italicaSaccharum spontaneum3.926.989275forward
CNT30497831Setaria italicaDigitaria exilis12.0647.8486.21232forward
CNT30558020Setaria italicaPanicum hallii11.3353.5689.91218forward

Expression of CNT30523459

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MVTVLVNDSYHVRIQHPCSEVLMLLAPKYFINISY*

>peptide 2 (40 aa)
MNHLHVFSCSCFCLWCVSDITLDLLKKVYFKLPLNMSTSR*

>peptide 3 (36 aa)
MHQHNSSNTMIWSPSPMNLSALLSEDCVDLLDLMVQ*

>peptide 4 (71 aa)
MRTTILNCMMFLRYTQESAFIHDYHDLFAAGWTMVVLMILSQVMQLLPQACCLPLPNQKGSYEVHSYRDLP*

>peptide 5 (50 aa)
MKFIRIETFHRPIAMYRRFILRDQRERLMPEGYVQSISLLGQASCSCMDG*

Sequence

>CNT30523459
CTCAGTGCTATGGCATGGAATTAAAGATCTGATCTATACACCCAGGTAACTAACTAGACTAATTGTGCAATATAAGTTTCCATCTTAAACCTTTTTCTGA
TTTTGTCATGCATCAGCATAATAGTAGTAATACTATGATCTGGTCACCCTCGCCCATGAATCTTTCAGCTTTGCTTTCTGAAGATTGTGTTGATCTCCTA
GATCTCATGGTGCAGTAGGGGACTATATACATAAAACACCTTTAGTTGTGCTCATCTAGATCTCTTTTCTTTCTCTGTTGGACTTCAATGCTTTGAACTT
TTGATCCTCGCGGAACATGAAATACAAGAGTTAGCATAAATCTTGTTATGGCTTGATTGCAGCATGCTCAATCTGTTATTCTAGTTTGATGAATCATCTA
CACGTGTTTTCATGTTCTTGCTTCTGTCTTTGGTGCGTCTCAGATATCACTCTGGATCTGTTGAAAAAAGTTTATTTTAAGCTGCCACTAAATATGAGCA
CTTCACGGTAGCGATAATATAGCAAGTAGTTATTATTTCTTGTGAGCAATAGTTGATATTTCATCAAACTAATCTTCATGTGTTATTTTGCAGGTTTTGC
ATGGGAGGGCAGCAAGCTAGAGGCGGCAACTGCATAACTTGCGACAAACTTGTAAGATTTCTTGAGAAGCTCTAAAAAAATAAAACATTGTCAATTACCA
TGACAATTTTTCAGAGTAATTAGACACATATATATTTTATCATCTCTTCTTGGCCTATTTACCTTAACAGGTCTGTACTGTCAACTAGGGCAGGAGACCA
AACTGTCATTTGCAGAAAGGTTTTTAAGTAAAAGTAAAACATCGTTTTGACAACAATTTGTCGTCCATGATTGTGCCCCTTTCTAAGACATTATTTTGTC
ACTTAAGTTTTCAAAATTCTTGAGCATTGGCATTTGCTCAATTGCTCTCTATGATATCCTTGAGGAATAGGAGTGCATTACTAAATATTGACTAAAGAAG
CTATGCATACTAAAACAATGTGCTGCTGAAAAATAGCCATAGATTTGGATCTCATATGTGATGGAAATTGTTGTGAGACCTCGACATGTACATGAACCTC
ATATATGATGCATAAATGTTATGATAGGATGAATTCCTATATGATATGATATGATATGCAATAGAGAGAATCAGTTATGATGAACTTACATTGATATGGA
GCTTCTCTAATATGGTGACGGTCTTGGTAAATGATTCATACCATGTTAGAATTCAGCATCCATGCTCTGAAGTACTAATGTTACTTGCGCCAAAGTACTT
CATTAATATTTCATACTGAAGCAACTATAGCTGTACATAACGTTAATGATCCCGTATACATATATGCTCATGCTCATGAACTCCCATGGGTTAGCCAAAA
CCATGCAAGTAGCCTATATCTATGCATGAGAACTACTATCTTGAATTGCATGATGTTTTTAAGGTATACCCAAGAGAGTGCATTTATTCATGACTACCAT
GATTTGTTTGCTGCAGGTTGGACCATGGTCGTGCTGATGATTTTATCGCAAGTTATGCAGTTGCTGCCTCAAGCTTGCTGCCTCCCTTTGCCAAACCAGA
AGGGATCATATGAAGTTCATTCGTATAGAGACCTTCCATAGGCCCATAGCCATGTATCGTAGATTTATCCTGAGAGATCAAAGAGAAAGACTGATGCCAG
AAGGCTATGTACAATCTATCAGTTTGTTAGGGCAAGCTAGCTGCTCATGTATGGATGGTTAAGTTGTTCCCATTGCTGAAAAAATAATGAAATACTTATG
TTGCTGAGTTTTTTTTGTTCTTTTGTGTATTCAAAATAGTTCTGATTCTGCTCTATATGAGGCTATGAGCAAAGGGCACGTGATAAGATTGAATTGTAAT
CTTGGCAATGTAAATTGAACGAGG