Detailed information on CNT30523333


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30364708Setaria italicaSorghum bicolor39.562.9186.11108reverse complement
CNT30369884Setaria italicaOryza glumipatula22.345.3388.5261reverse complement
CNT30580584Setaria italicaEchinochloa crusgalli65.5714.0986.59179reverse complement
CNT30557101Setaria italicaPanicum hallii35.1614.4483.3396forward

Expression of CNT30523333

Peptides detected in this lncRNA

>peptide 1 (31 aa)
AMFSSLQTPNFDTMQKEDSPSHQTCGTCMEY*

>peptide 2 (56 aa)
RPCLVPSKLPTLTLCKKKIPHHIKLAVHAWSTKCRRNQKLIAQFCCTLRDESFEPN*

Sequence

>CNT30523333
AGGCCATGTTTAGTTCCCTCCAAACTCCCAACTTTGACACTATGCAAAAAGAAGATTCCCCATCACATCAAACTTGCGGTACATGCATGGAGTACTAAAT
GTAGACGAAATCAAAAACTAATTGCACAGTTTTGTTGTACTTTACGAGACGAATCTTTTGAGCCTAATTAGTCAATATTTGGATAATAACTCACAAATAC
AAACGAAACGCTACAGTTGTGCATTTATGGCAAAATGCCAATTTTGCTACTCCCAAATTGGGAACTAAACAAG