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Detailed information on CNT30523218


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 4e-52

BLAST vs NONCODE:
NONGMAT001327, E-value = 2e-52

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671259Setaria italicaSetaria viridis45.660.8898.8249forward
CNT30317753Setaria italicaCorylus avellana52.0140.882.04284forward
CNT30546681Setaria italicaIpomoea triloba43.7750.8582.85239forward
CNT30703567Setaria italicaQuercus lobata43.2246.7381.78236forward
CNT30375418Setaria italicaArabidopsis thaliana15.7536.4487.2186forward
CNT30617135Setaria italicaSesamum indicum53.8529.3184.35294forward
CNT3069058Setaria italicaQuercus suber40.4825.2682.35221forward
CNT30196946Setaria italicaPisum sativum26.1919.9781.12143forward
CNT3042757Setaria italicaPrunus dulcis55.8650.3382.62305forward
CNT30178072Setaria italicaSecale cereale57.8858.393.04316forward
CNT30286550Setaria italicaTriticum aestivum57.8852.3294.62316forward
CNT30219776Setaria italicaHordeum vulgare43.9657.0195.83240forward
CNT30386576Setaria italicaTriticum turgidum56.2352.3995.44307forward
CNT3086297Setaria italicaVigna radiata28.9413.5987.34158forward
CNT30437818Setaria italicaAegilops tauschii56.9653.8195.5311forward
CNT30244338Setaria italicaAvena sativa55.8654.9595.08305forward
CNT30656490Setaria italicaTriticum dicoccoides56.9650.3294.53311forward
CNT3059678Setaria italicaArabidopsis lyrata29.4933.4783.23161forward
CNT3082467Setaria italicaBrassica juncea45.9735.0180.88251forward
CNT30471244Setaria italicaSaccharum spontaneum56.9632.596.14311forward
CNT30135649Setaria italicaLolium perenne56.5960.2393.2309forward
CNT30679384Setaria italicaTriticum urartu57.8852.1593.35316forward
CNT30348363Setaria italicaEragrostis tef57.1456.0196.47312forward
CNT30357929Setaria italicaLactuca sativa52.5664.0679.79287forward
CNT30370989Setaria italicaOryza glumipatula54.0347.295.25295forward
CNT30645456Setaria italicaCannabis sativa44.3231.5583.88242forward
CNT3024855Setaria italicaPopulus trichocarpa47.2543.9579.46258forward
CNT30325970Setaria italicaAsparagus officinalis39.3831.1685.58215forward
CNT30331117Setaria italicaDioscorea rotundata53.1130.6278.62290forward
CNT30147953Setaria italicaBrachypodium distachyon56.9635.7993.25311forward
CNT30101647Setaria italicaOryza rufipogon55.1332.395.35301forward
CNT30496126Setaria italicaDigitaria exilis56.5945.4493.85309forward

Expression of CNT30523218

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MSPEMRFTPPLLASLRIAGFVMPWILSRRTLR*

>peptide 2 (33 aa)
MKLNMDQNTLASSTDFLTATQDFRHGHRAPPNP*

Sequence

>CNT30523218
GGGAAATGCAGATGAACTTTGCAGTACAACTCCACATACTACTACTTTGACCACGGCTCTGAACACGGAACAATAATTAGCACTACTGATAAGCCTATGA
AACTGAACATGGACCAGAACACCCTCGCCTCCTCCACCGATTTCTTGACCGCGACCCAAGACTTCCGCCACGGCCACCGGGCGCCGCCGAATCCGTAGAG
GGTGCGGCCCTGGCGCTTGAGCGCGTAGACGACGTCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCCGTGTAGGTGACGGCGTCGCGGATGACGTTC
TCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATGAGCCCGGAGATGCGCTTCACGCCGCCCCTCCTCGCCAGCCTCCGGATCGCCGGCTTCG
TGATGCCCTGGATATTGTCGCGGAGGACCTTGCGGTGACGCTTCGCGCCGCCCTTGCCCAGACCCTTGCCGCCCTTGCCGCGCCCAGACATGGTCGCCCG
CTCGCTCGAACTCGAAGAAGAGGATGGGGGGGATTTGGAGATTTGG