Detailed information on CNT30523132


BLAST search results

BLAST vs Swiss-Prot:
sp|P49120|H2B4_MAIZE, E-value = 6e-23

BLAST vs NONCODE:
NONORUT000045, E-value = 2e-34

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674495Setaria italicaSetaria viridis63.48100100379forward
CNT30518306Setaria italicaJuglans regia16.2533.1183.5197forward
CNT30178569Setaria italicaSecale cereale27.4725.3596.34164forward
CNT30226219Setaria italicaHordeum vulgare16.4241.8898.9898forward
CNT30553215Setaria italicaOryza glaberrima58.2959.1883.33348forward
CNT30363844Setaria italicaSorghum bicolor72.3654.4192.82432forward
CNT30108786Setaria italicaOryza longistaminata58.1210.2588.47347forward
CNT30324987Setaria italicaAsparagus officinalis16.4225.8694.998forward

Expression of CNT30523132

Peptides detected in this lncRNA

>peptide 1 (60 aa)
NKQCSTSITQFLVSYRSTTAHRSTTIHFKFHQLLLLPLALPDKLSHIYQHHRATTSTNLR*

>peptide 2 (42 aa)
KQTMFHKHHTILSLLPQHNCTQVNNDPFQVSPTTTTTTSPTG*

Sequence

>CNT30523132
TAAACAAACAATGTTCCACAAGCATCACACAATTCTTAGTCTCTTACCGCAGCACAACTGCACACAGGTCAACAACGATCCATTTCAAGTTTCACCAACT
ACTACTACTACCACTAGCCCTACCGGATAAACTGAGCCACATCTACCAACACCACCGAGCTACTACTAGCACCAACCTAAGATGAGGTGAACTTGGTGAC
AGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCCCGGGAGGAGATGCCGATGTCGGGG
TGCACCTGCTTCAGCACCTTGAAGATGTAGATCTTGTAGGTCTCCACCGACTTCTTCGCCTTCTTCTTCCCCTTCTTGCCCTCGCCGCCCTCCTTGCCGG
CGGACTTGCCCGCGGGGAGACGCTTCTCCGCCTTGGGCTTCTTCCCCGCCGGGGCCTTCTCCGCCGCGGGCTCCTCCTCTGCGGGCTTCTTCGCCGCCGG
CTTCTTCTCCGCCTTGGGGGCCATCGGTGCGGATGCCTGGGTTCGCGGCTGGGAGTGATTCGCTCGGTCTCGGTCGATTTGGGGACGGGGAATTTCG