Detailed information on CNT30523050


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9C810|Y1342_ARATH, E-value = 1e-89

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690625Setaria italicaOryza sativa18.9623.6682.43313forward
CNT30674965Setaria italicaSetaria viridis32.4710099.63536forward
CNT30181533Setaria italicaSecale cereale7.3328.6187.6121forward
CNT30290881Setaria italicaTriticum aestivum8.324.6488.32137forward
CNT30388744Setaria italicaTriticum turgidum7.6336.7386.51126forward
CNT3014375Setaria italicaZea mays12.2485.2389.6202forward
CNT30580330Setaria italicaEchinochloa crusgalli34.89100.1791.84576forward
CNT30497421Setaria italicaDigitaria exilis29.2533.8991.3483forward

Expression of CNT30523050

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MGLLFEKYSASCILESMSTAFWYVSEVSAKLPAPNLYPHSPYHGCPLVTACRSL*

>peptide 2 (55 aa)
MHCSGQQQNGHHPVVFHPVLEENNQAALVNQQPLMQLPEVHAKLPTVQFAQPGEP*

>peptide 3 (61 aa)
MGVPQRRQQVRRWPESWLQSFSMMKWYRFPQTGCPLHPATKQTHQTQDSTADALLLYANRI*

>peptide 4 (35 aa)
SKHMLHGGCVTEVWKVRELFSLEALEHEVRLLKCP*

>peptide 5 (39 aa)
MHHSVQQVRGVIQMQRPWECRSEGSRCAGGQKAGCSRSR*

>peptide 6 (69 aa)
MQESVVHSMFLGDVHDSDLPAVMEMTVRLKDSILDKCRFQSKIVVLLLSFTSHAAPCTSDPISSLCHGQ*

>peptide 7 (35 aa)
MNCLQSRIFAAALCADEPTTSGCEDSMDSGFSRAS*

>peptide 8 (33 aa)
MVSLPTDWVPTPSCNQTNASDTRFHCRCFVAVC*

>peptide 9 (31 aa)
PSTCFTGVVSLKFGKSGSCSAWKLWNMRYVS*

Sequence

>CNT30523050
ATCCAAGCACATGCTTCACGGGGGTTGTGTCACTGAAGTTTGGAAAGTCAGGGAGCTGTTCAGCTTGGAAGCTTTGGAACATGAGGTACGTCTCTTGAAA
TGCCCTTGAAGCCTGCACTTTCAGTTCAGCAAGGGTAGCACTTGCTGGTAAAAGTACAAGTTCCTCTGGAGGTGCTGTGTAGTCTTTTGGGTGATCAAGT
AGTTCAATGGAGCACCTCACAGAGAGCAAGAATGGGTTAGAAGGAGTCCTGAGAGCATGCTTGTCATAATGCTTGATGAACTGCTTGCAATCAAGAATCT
TTGCTGCTGCACTATGTGCTGATGAACCCACCACCTCTGGCTGTGAAGACAGCATGGACTCTGGGTTCAGCAGAGCATCGTAGAGGAATCTAAGATCATG
CAGGAGATGTTCAACAGAGGGCTCAAACGTTGCTGCATTAACTGGTGACCGAATGGAGGAAGATTCCAGCCTGCTTGTCATGAAATAATAATGCATTGCA
GCGGACAGCAACAAAATGGCCATCATCCAGTTGTTTTCCACCCAGTTCTCGAAGAGAATAATCAAGCAGCTCTTGTGAATCAACAGCCTTTGATGCAGCT
CCCCGAAGTGCACGCCAAGCTACCCACTGTCCAGTTTGCACAACCCGGAGAACCTTAAGCATTGCAGCTTCTGCTCGATCAAAATCATCTTTAGTCCACG
CACAGAGCACATCAGATGCAAGTTCTTTGCGCTTATAAGTTGAGGGTTTTGACATCTTCTGAGCTTGATGAAGCAGGTGCATAATAAAGCGGAAAAGGTC
CCGTAGTGTCACTAGTTGGCGATCGCAGAGTGCCCAATAAAGAGCAATTGTGTTCTGCAATGGAGTCCTGATGGGGCTTCTGTTCGAGAAGTACAGTGCC
AGTTGTATACTTGAAAGCATGTCTACTGCATTTTGGTATGTCTCTGAGGTTAGTGCAAAGCTTCCAGCACCAAACTTGTATCCCCATTCGCCATACCATG
GGTGCCCACTGGTGACTGCATGCAGGAGTCTGTAGTCCATTCCATGTTTCTTGGAGATGTCCATGACAGTGACCTTCCTGCAGTGATGGAAATGACAGTT
AGGTTGAAGGATAGCATTTTGGATAAGTGTCGATTCCAATCAAAGATTGTTGTTCTGCTCCTTTCATTTACCTCACATGCAGCACCTTGCACAAGCGATC
CCATAAGCTCATTATGTCACGGCCAGTGAGGAATCTTGAACCACCTTCACGGCCATTTACCCTGAGGAGGTGCCCATAGCCGTTTGCATGCACCACAGCG
TGCAGCAAGTGAGAGGAGTCATCCAAATGCAGCGACCATGGGAGTGCCGCAGCGAAGGCAGCAGGTGCGCCGGTGGCCAGAAAGCTGGTTGCAGTCGTTC
TCGATGATGAAATGGTATCGCTTCCCACAGACTGGGTGCCCACTCCATCCTGCAACCAAACAAACGCATCAGACACAAGATTCCACTGCAGATGCTTTGT
TGCTGTATGCTAACAGGATATGACAACGAAGATTGAATCAATCATGGTTATGGATGTTGAAAGCAACAGCCTAACAATTGGCTGACAAGACGAAAGCTTC
CAGAAAATTACAGTGAAACGGGCCGAATTTTCATAAAATTTCAAAATAGAA