CANTATAdb - search

Detailed information on CNT30522992

BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ZBP3|H2B2_ORYSJ, E-value = 8e-46

BLAST vs NONCODE:
NONORUT000045, E-value = 3e-51

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30674619	Setaria italica	Setaria viridis	37.75	58.35	98.39	248	forward
CNT30171046	Setaria italica	Trifolium pratense	19.48	36.06	82.81	128	forward
CNT3066775	Setaria italica	Leersia perrieri	19.03	32.55	96	125	forward
CNT30369945	Setaria italica	Oryza glumipatula	66.97	63.22	85.23	440	forward
CNT30576366	Setaria italica	Oryza barthii	40.03	50.19	92.02	263	forward

Expression of CNT30522992

Peptides detected in this lncRNA

>peptide 1 (75 aa)
APLLFHQITNLIPLHTERTRSGTPTSNYTIHSTQIPGSRHHYQEKQATRAKGETYRLRRGELGDGLGALGDGVLR*

Sequence

>CNT30522992
GCACCACTACTATTCCATCAGATAACAAACTTAATTCCACTTCATACAGAAAGAACACGATCAGGAACCCCAACATCTAACTACACCATCCATTCCACCC
AAATTCCTGGAAGTAGGCATCACTACCAGGAAAAACAGGCCACACGAGCTAAGGGGGAAACCTATCGTCTACGACGAGGTGAACTTGGTGACGGCCTTGG
TGCCCTCGGAGACGGCGTGCTTCGCTAGCTCGCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCCCTGGAGGTGATGGTGGGCTTCTTGTTGTAGCG
CGCGAGCTTGGCGGCCTCACCGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGGGTGCACCTGCTTCAGCACCTTGAAGATGTAGATC
TTGTAGGTCTCCACCGACTTCTTCGCCTTCTTCTTCCCCTTCTTGCCCTCGCCGCCCTCCTTGCCGGCGGACTTGCCCGCGGGGAGACGCTTCTCCGCCT
TGGGCTTCTTCCCCGCCGGGGCCTTCTCCGCCTTCTCCGTCGCGGGCTCCTCCTCCGCGGGCTTCTTCGCCGCCGGCTTCTTCTCCGCCTTGGGGGCCAT
CGACGCGGCTGCGCTCGGCGTTTGGGTCGGTGATTTGGGAGAAGAGGAGGCGGCGAA