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Detailed information on CNT30522940


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41575|H2B6_WHEAT, E-value = 3e-32

BLAST vs NONCODE:
NONORUT000045, E-value = 2e-34

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693619Setaria italicaOryza sativa61.3668.2591.9432forward
CNT30315505Setaria italicaCorylus avellana27.4142.2387.05193forward
CNT30518188Setaria italicaJuglans regia26.8521.4585.71189forward
CNT30618877Setaria italicaSesamum indicum27.2724.483.85192forward
CNT30379403Setaria italicaManihot esculenta16.4820.6483.62116forward
CNT30196132Setaria italicaPisum sativum16.925.1187.39119forward
CNT30163372Setaria italicaPistacia vera16.4820.1482.76116forward
CNT30296237Setaria italicaTriticum aestivum38.7856.6495.6273forward
CNT30552407Setaria italicaOryza glaberrima55.1155.9189.69388forward
CNT30243491Setaria italicaAvena sativa56.6845.0390.48399forward
CNT30657146Setaria italicaTriticum dicoccoides36.0844.896.85254forward
CNT30455629Setaria italicaSaccharum spontaneum54.5544.7695.83384forward
CNT3015998Setaria italicaZea mays32.8159.8492.64231forward
CNT30606042Setaria italicaGossypium raimondii20.0346.2383.69141forward
CNT30346527Setaria italicaEragrostis tef25.1483.8998.31177forward
CNT30363575Setaria italicaSorghum bicolor53.694196.3378forward
CNT30596761Setaria italicaOryza meridionalis62.2255.4486.3438forward
CNT30360466Setaria italicaLactuca sativa17.7629.6985.6125forward
CNT30570929Setaria italicaVitis vinifera26.2827.5782.16185forward
CNT30149313Setaria italicaBrachypodium distachyon18.0436.3996.06127forward
CNT30101075Setaria italicaOryza rufipogon43.7543.9487.34308forward
CNT30574682Setaria italicaOryza barthii50.9952.4989.14359forward
CNT30557628Setaria italicaPanicum hallii52.1365.8995.91367forward

Expression of CNT30522940

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSLMKEFMMDMALEEMPMSGCTCFSTLKM*

>peptide 2 (68 aa)
TVTNSRSINKQCSTSITQFLVSYRSTTAHRSTTIHFKFHQLLLLPLALPDKLSHIYQHHRATTSTNLR*

>peptide 3 (50 aa)
HRNQFKIHKQTMFHKHHTILSLLPQHNCTQVNNDPFQVSPTTTTTTSPTG*

Sequence

>CNT30522940
GCACCGTAACCAATTCAAGATCCATAAACAAACAATGTTCCACAAGCATCACACAATTCTTAGTCTCTTACCGCAGCACAACTGCACACAGGTCAACAAC
GATCCATTTCAAGTTTCACCAACTACTACTACTACCACTAGCCCTACCGGATAAACTGAGCCACATCTACCAACACCACCGAGCTACTACTAGCACCAAC
CTAAGATGAGGTGAACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGGACGGAGGTCTGGATCTCCCGGGAGGTGATGGTGGGCTTCTT
GTTGTAGCGCGCGAGCTTGGCGGCCTCACCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATG
TCGGGGTGCACCTGCTTCAGCACCTTGAAGATGTAGATCTTGTAGGTCTCCACCGACTTCTTCGCCTTCTTCTTCCCCTTCTTGCCCTCGCCGCCCTCCT
TGCCGGCGGACTTGCCCGCGGGGAGACGCTTCTCCGCCTTGGGCTTCTTCCCCGCCGGGGCCTTCTCCGCCGCGGGCTCCTCCTCTGCGGGCTTCTTCGC
CGCCGGCTTCTTCTCCGCCTTGGGGGCCATCGGTGCGGATGCCTGGGTTCGCGGCTGGGAGTGATTCGCTCGGTCTCGGTCGATTTGGGGACGGGGAATT
TCGA