Detailed information on CNT30522911


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZS97|AB8I_ARATH, E-value = 2e-102

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639337Setaria italicaNymphaea colorata37.4236.4380.43235forward
CNT30682369Setaria italicaTriticum urartu29.351.490.22184forward
CNT30364022Setaria italicaSorghum bicolor55.129.993.35346forward
CNT30579890Setaria italicaEchinochloa crusgalli80.5795.1192.89506forward
CNT30115765Setaria italicaOryza nivara53.8275.9687.87338forward

Expression of CNT30522911

Peptides detected in this lncRNA

>peptide 1 (82 aa)
FQIANCAPLIGYDQSPLKLPGLLVVDPEVGRDFHGADRVLGHVAEGPVAEHRRIEGGIVVVAGGNDAAEVAFNQVGVLADGL*

>peptide 2 (57 aa)
MASEMEQKMTPLAMSASRWVVAMEVESMTASTATLVLSSSGSTSSRLLSLGLVLGAE*

Sequence

>CNT30522911
CTTCCAAATAGCTAACTGTGCTCCTCTCATCGGCTACGATCAGAGTCCTCTCAAACTGCCCGGTCTCCTTGTCGTTGATCCTGAAGTAGGTCGAGATTTC
CATGGGGCAGACCGTGTCCTTGGGCACGTAGCAGAAGGACCCGTCGCTGAACACCGCAGAATTGAGGGCGGCATAGTAGTTGTCGCCGGGGGGAACGATG
CTGCCGAGGTAGCGTTTAACCAGGTCGGGGTACTCGCGGATGGCCTCTGAGATGGAGCAGAAGATGACGCCCTTGGCCATGAGCGCCTCGCGGTGGGTGG
TAGCGATGGAGGTGGAGTCGATGACGGCGTCGACGGCGACGTTGGTCTTGAGCAGCTCCGGGTCGACCTCGTCGAGGCTGTTGAGCTTGGGCTTGGTCTT
GGGCGCGGAGTAGTAGCAGAGGGATTGCAGGTCGACGGGCGCGTACTCGTTGTCGCTCCAGGTGGGCTCGACCATGGTGAGGAATCGGCGGTAGGCGGCG
AGGCGGAAGTCGAGCATCCACGCGGGCTCCGCCTTGAGCTCGGAGATGCGGCGGACGGTGGCCTCCGAGAGGCCCTTGGGGATGGAGAAGGACTCGAAGT
CGGAGACGAACCCGTACTTGTACTCCCG