Detailed information on CNT30522578


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10RZ1|BAMY2_ORYSJ, E-value = 4e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376942Setaria italicaArabidopsis thaliana5.7526.8684.2176forward
CNT30392054Setaria italicaTriticum turgidum16.0522.1191.51212forward

Expression of CNT30522578

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MPSHPPLTSQLPFPSYTFQRYTRQIGMADQRSLRIVLLVRSSMVYHRLEIEQAKPRGNATPRSISW*

>peptide 2 (43 aa)
AVQIMGLSIHFRRLLTAAEEHQTQISLLSFEHGNYVPCPVTHP*

>peptide 3 (67 aa)
MGDGRRGSRGRGRVNRPRSVVVRGWTATCFGADGAPGHVAVSVEIGFPDARRVFPGAGHGRWTVLAVH

>peptide 4 (70 aa)
MSARIIERERATRSDHQGKEKTRNEMDLGRRDWKWIRPGTLGFLCCDDLDWDRVIIVPGSGGEPPRRGVK*

>peptide 5 (93 aa)
MRCPLGLLNANGRLDQITKEKKKLGTKWILAEETGNGFGPGPWDSSAATIWTGIELLLFRGAEGSPRAAGLNKAGEGHGRAGDVARCAPVSGT*

>peptide 6 (45 aa)
MATTCHAQSPTPNLAASFPFLHFPAVHAPNRHGRSAQLTNRTTST*

>peptide 7 (35 aa)
MDSARDPGIPLLRRSGLGSSYYCSGERRGAPAPRG*

Sequence

>CNT30522578
AGCAGTACAAATCATGGGTTTATCCATACATTTTCGTAGGTTATTAACAGCAGCAGAAGAGCATCAGACTCAAATCTCCCTGCTAAGCTTCGAACATGGC
AACTACGTGCCATGCCCAGTCACCCACCCCTAACCTCGCAGCTTCCTTTCCCTTCTTACACTTTCCAGCGGTACACGCGCCAAATCGGCATGGCCGATCA
GCGCAGCTTACGAATCGTACTACTAGTACGTAGCAGTATGGTGTATCACCGTCTAGAGATCGAACAAGCCAAGCCGCGGGGGAACGCGACGCCCCGGTCG
ATTAGTTGGTGAGCGCGACGGCGGCCTCCTGCACGAGCGGCTGGGTGGCCATACCCTGTCGTAGCACTGGAACTCGCCGATGCCAGGGAAGGACCAGGTG
CCGTTGCTCTCCGGGTAGGACGGGTAGCGGAGCTCGCCGGCGGGGCCCATGCCGACCTGGATCTCGACGATGGTGTTGCCCATGTAGGTGGCGAAGTGGT
CGCGGAAGGCGCGCATGAAGTCGGCGTAGCACTGGATGGGGGTGCGGCCCTTGAGCACGGGCAGCGCGTCGCAGCCCAGCGAGACGTACTCGTAATTCCG
GCGCCCGCTCCGGTCGGTGCTGTTGCCGTCCTTGCGCACCGTGTCGAGCGGCATCATCACGAACACCGGCACGCCGGCCTTGCTCTTCAGCTCGGCGGCC
ACGTCCGCGTGCTCCGCCTCCGGCGCGGCCTCCACCAGCGCCTGGCACGCCATGGCGAGCGCCATCATACGCAGTAACGGCTGACGAGATGAGATGTCCG
CTAGGATTATTGAACGCGAACGGGCGACTAGATCAGATCACCAAGGAAAAGAAAAAACTAGGAACGAAATGGATCTTGGCCGAAGAGACTGGAAATGGAT
TCGGCCCGGGACCCTGGGATTCCTCTGCTGCGACGATCTGGACTGGGATCGAGTTATTATTGTTCCGGGGAGCGGAGGGGAGCCCCCGCGCCGCGGGGTT
AAATAAGGCCGGGGAGGGGCACGGGCGCGCGGGCGACGTGGCGCGGTGTGCGCCGGTGAGCGGAACGTGAGGCGGTGACGGGAGGTGGGGGAGAGAGAGC
CTGCGGCCTGCCTGCAAATGGGCGATGGGCGGCGGGGTTCCCGCGGCCGCGGACGCGTGAACCGGCCTCGAAGCGTCGTCGTGAGGGGGTGGACGGCGAC
GTGTTTTGGCGCGGACGGCGCGCCGGGCCACGTTGCTGTCAGCGTGGAGATAGGGTTCCCCGATGCGCGACGCGTGTTCCCCGGAGCAGGGCATGGACGC
TGGACGGTTTTGGCCGTGCAC