CANTATAdb - search

Detailed information on CNT30522183

BLAST search results

BLAST vs Swiss-Prot:
sp|P14279|CB25_SOLLC, E-value = 5e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30394515	Setaria italica	Triticum turgidum	46.17	43.31	88.76	356	forward
CNT30142775	Setaria italica	Lolium perenne	32.81	21.98	89.33	253	forward
CNT30100870	Setaria italica	Oryza rufipogon	30.35	43.25	95.73	234	forward
CNT30498755	Setaria italica	Digitaria exilis	40.21	54.29	90.32	310	forward

Expression of CNT30522183

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MGPLPVTMACTKNPNMENMARRPFLSSFTLSSAAVSGSSARPSGSKAPPG*

>peptide 2 (71 aa)
MSTTWQAQMARMLCACTRLGLPRYLGRALDGAAHGDAAAGIGGGGGAGDQGLAEEAGGLVERRRGHLLRVR*

>peptide 3 (53 aa)
MVMRPPASAAAAGRETRAWPRKLVVWWSADAAIFCVSGEHDGAAAYWSVRLFSA

Sequence

>CNT30522183
TGACGGTTCACTCACGAATGGTACACCGTTGCATTGATTCATCATCAGCTGACATACGCATCTGTGCTTAGTTTACAATAATTTTACATCGTCGGGCACG
TCCAGGCAGCTGCTAGCTGGTCTGGTCTGGTCTGATCTGAAGAGCTCACGAGCACAAAGCAATACGCTGGCGCGTGCAACTACTACACGCCTACTCACGA
GCAGAGGGCACATCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCATGCGTTGTTGGCGACGGGGTCGGCGACGTGGTCGAAGAGGTTCTCGATGGGT
CCCTTGCCGGTGACGATGGCCTGCACGAAGAACCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGGCGGTGT
CCGGGTCGTCGGCGAGGCCCAGCGGGTCGAAGGCGCCGCCGGGGTAGACCTTGTCGAGTCCCTCCCCGAGCGGGCCGCCGCCGACGCGGTAGCCCTCGAC
GAAGCCCATGAGCACGACCTGGCAGGCCCAGATGGCCAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTACTTGGGGCGCGCTCTTGACGGT
GCGGCGCATGGTGATGCGGCCGCCGGCATCGGCGGCGGCGGCGGGGCGGGAGACCAGGGCCTGGCCGAGGAAGCTGGTGGTCTGGTGGAGCGCCGACGCG
GCCATCTTCTGCGTGTCCGGTGAGCACGACGGCGCTGCTGCCTACTGGTCAGTGAGATTGTTTTCGGCTGA