Detailed information on CNT30522178


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30444327Setaria italicaSaccharum spontaneum34.9917.2695.74141forward
CNT30346248Setaria italicaEragrostis tef25.0614.794.06101reverse complement
CNT30369810Setaria italicaOryza glumipatula19.3528.2689.7478forward

Expression of CNT30522178

Peptides detected in this lncRNA

>peptide 1 (41 aa)
ACMFLILCLVTERERKMSTRKNWYTRTKNGQMQNREQKKCG*

>peptide 2 (37 aa)
MWRCVSINNRCSLSRRTGRRRRAPRCRRRRAASPASAT

>peptide 3 (59 aa)
MYVSHLMFSYREGKKNEYKKKLVHQNQKRANAKQRTKKVWLNNYTLPIFLCCIQINYRP*

Sequence

>CNT30522178
GCATGTATGTTTCTCATCTTATGTTTAGTTACAGAGAGGGAAAGAAAAATGAGTACAAGAAAAAATTGGTACACCAGAACCAAAAACGGGCAAATGCAAA
ACAGAGAACAAAAAAAGTGTGGCTAAACAATTATACACTTCCTATCTTCCTTTGCTGTATACAAATTAATTATCGGCCTTAACCCCCCCAACAATAATGC
CTAACAAAAGGAATTAATCTGCTAGCTAAGTAAATTAAGAATCATCTGGGACGAAGAAGAAGACGAAGAAGGAGGAGGAGGTTTGTGATGTGGCGATGTG
TAAGCATCAACAACCGCTGTAGTCTGTCAAGGAGAACCGGCCGGCGCCGTCGGGCCCCGCGTTGCCGGCGCCGGCGTGCTGCAAGCCCAGCGTCAGCGAC
ACG