Detailed information on CNT30522103


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186723Setaria italicaSecale cereale34.3319.5488.82161forward
CNT30392832Setaria italicaTriticum turgidum22.638.2791.51106forward
CNT30651648Setaria italicaRosa chinensis36.8926.0579.77173forward

Expression of CNT30522103

Peptides detected in this lncRNA

>peptide 1 (89 aa)
RRAHLPHQRLGHALRVLRLLVVPHLDAGEVEHGAMAGQQPRHGEVPVVVPGVVVPRGELRRVRPGAVVPVDAGDLHGDLDGGGCGRRAP*

>peptide 2 (85 aa)
MPATFTETSTGEDAVAVLHEHLRVPRQEEVAVLGAPPAVLPAEEDGVLRPVVVAAGVRRPAVAPLRLAGRLRCRLQAAKHVLHTPN

>peptide 3 (40 aa)
MRSPCSMSICEYHDRKKSPYSVLHPPFSRRKKMVSSGQLL*

>peptide 4 (52 aa)
AAPTCRTSASGMHCASCGCSWSRISTQVKLSTAPWRASSRATGRYPSWCRVL*

Sequence

>CNT30522103
CGCCGCGCCCACCTGCCGCACCAGCGCCTCGGGCATGCACTGCGCGTCCTGCGGCTGCTCGTGGTCCCGCATCTCGACGCAGGTGAAGTTGAGCACGGCG
CCATGGCGGGCCAGCAGCCGCGCCACGGGGAGGTACCCGTCGTGGTGCCGGGTGTTGTAGTACCCCGCGGTGAGCTCCGGCGCGTGCGACCGGGTGCCGT
AGTGCCAGTGGATGCCGGCGACCTTCACGGAGACCTCGACGGGGGAGGATGCGGTCGCCGTGCTCCATGAGCATCTGCGAGTACCACGACAGGAAGAAGT
CGCCGTACTCGGTGCTCCACCCGCCGTTCTCCCGGCGGAAGAAGATGGTGTCCTCCGGCCAGTTGTTGTAGCTGCCGGCGTCCGTCGGCCCGCCGTGGCC
CCACTCCGGCTTGCCGGCCGCCTCCGCTGCCGCCTTCAGGCTGCTAAGCATGTACTGCACACGCCAAAC