Detailed information on CNT30521774


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374052Setaria italicaArabidopsis thaliana2.725.1885.9271forward
CNT30350530Setaria italicaEragrostis tef9.3223.4787.35245forward
CNT30364315Setaria italicaSorghum bicolor3.1625.9489.1683forward
CNT30148536Setaria italicaBrachypodium distachyon3.3140.6593.187forward
CNT30583436Setaria italicaEchinochloa crusgalli12.134.8791.19318forward
CNT30557299Setaria italicaPanicum hallii8.4122.4688.69221forward

Expression of CNT30521774

Peptides detected in this lncRNA

>peptide 1 (33 aa)
GLSRGYLIGINIFIKYNMPIVCGLYIITELQNA*

>peptide 2 (31 aa)
MCSYFFLIGESTLIPMRRNRKKINPRNYHKN*

>peptide 3 (39 aa)
MRGSDENYMIFMLSTIYGVRCKVKKGTNMNEKIYRVITN*

>peptide 4 (34 aa)
MKAPRILSGHFKKRKNTRNFQKSKTSSHLSIQYT*

>peptide 5 (29 aa)
MLVPLQHSAASEAEHPSQCSACRRRCPSW*

>peptide 6 (30 aa)
MNESQGVNHKETHPHAGAFTALCSERSRAP*

>peptide 7 (30 aa)
MMYVTIYKYIEEVIRIHIFMLKIYLKLRFH*

>peptide 8 (92 aa)
MVGSPLAKTISSRSRVTLKNGHSLYISLSIWKFLISFFMACLNAAPNPSHTGRWNLVCVHEKIHGIARSDSMPPFGFLFAGRVLRNVRKSTS*

>peptide 9 (50 aa)
MARAFACAVQFVPHITKHHAIRFICRKLPPEFCTNEFSSENWQTDKADSC*

>peptide 10 (57 aa)
MPAAMPFMVRMSVSSSPGPYSLAGISLCPATCTKMVSSQDFLVPSNLHKDEIHSYEF*

Sequence

>CNT30521774
GGGTTGAGCAGGGGGTATCTTATTGGAATAAATATCTTTATTAAATATAACATGCCAATAGTTTGTGGTCTTTATATTATTACAGAATTACAGAATGCTT
AAACAGCCAAGAAGTTCCACTTGATCTTTACATCAAGCCTTATTCGAAAAGAAAACATGAACGAAAGCCAAGGTGTGAATCATAAAGAAACACATCCACA
TGCTGGTGCCTTTACAGCACTCTGCAGCGAGCGAAGCAGAGCACCCTAGCCAGTGTTCTGCATGCCGGCGGCGATGCCCTTCATGGTGAGGATGAGCGTG
TCCTCCAGCCCCGGCCCGTACTCGCTCGCCGGGATTTCCTTGTGCCCAGCAACCTGCACAAAGATGGTGAGTAGTCAGGATTTCCTTGTGCCCAGCAATC
TGCACAAAGATGAAATTCATTCATATGAGTTTTAATTTATTACCTGCAGGATAAGCTTCTCTGTTTCCACGTAGTTGTTCCTGAGCTGCTCCCCGAATGG
CTTGAGTTCGTCGGCGACGAGCAGCTGGTCGTAGAGGCCGGCGATGGTGGGGTCTCCCTTGGCTAAGACCATCTCGAGCAGGTCCAGGGTGACCCTGAAG
AATGGCCACTCGTTGTACATCTCCTTGAGCATCTGGAAGTTCTTGATATCCTTCTTCATGGCGTGCTTGAACGCGGCGCCGAACCCGAGCCACACCGGGA
GGTGGAACCTCGTCTGCGTCCACGAGAAGATCCACGGGATCGCGCGGAGCGACTCGATGCCGCCCTTCGGCTTCCTCTTCGCCGGCCGAGTCCTCCGGAA
TGTCAGAAAATCCACTAGTTAGCAGATGGCGCGAGCGTTCGCGTGTGCTGTACAATTTGTCCCTCACATAACCAAGCACCACGCGATACGGTTCATTTGC
AGGAAGTTGCCTCCAGAATTCTGCACCAACGAATTCTCTTCAGAAAATTGGCAAACTGACAAGGCTGATTCTTGTTAACATCATAGAGACTCCTCTTGAA
GCCTCCACATGAAGGCACCTAGGATTCTAAGTGGGCACTTTAAAAAAAGAAAAAATACTAGAAATTTTCAAAAAAGCAAAACATCTAGCCATCTATCTAT
TCAGTATACTTAAATCATCCAATTCGTTGAACTATTATGTTCCTGCCATTATGAAAATAGTTTAAAGTAACCTCAGTATATATCTAAATTACCTACATAT
GCCATTACATAAAATAAACTAAAGTACACCTAATCTTTGTCTAAATTACCCACTTATACCATTATTAAGAATAGTTTAAAATAACCCACTAAATTTGTTT
CAAATTGCCCACCACTTACATTATAAAAAAATAACTTAAAGTAAACCCTTAAGTTTACATCTAAATTACTCACATATTCCATGTTTAAAAATATATCCCA
AGATACACCAATATATTATTCTAATCATTAAGGTATATACGCATGATGTATGTCACCATTTATAAATATATAGAGGAAGTGATAAGAATACATATTTTCA
TGTTAAAAATATATCTCAAACTTAGGTTCCATTAAACAAATTTAAGAGTGTATCTACGGTGCAAGTGAAACAAGATATTATAAATATAGATGAAAATGTT
ATAGAGTAATTACTACTAAAATCTTTTATAATCCGATGAAGATAATAAATATTAGAATATTAAAAAAATGAGAGTGAGTTCAAGGTAACAGTTTTGAGTG
TTTAGCTATGTGCTCTTATTTTTTTTTAATTGGAGAATCTACATTAATCCCCATGAGACGCAATAGGAAAAAGATAAATCCAAGAAATTATCACAAAAAT
TGAAACATCCACGTATCAATCTGGTAGACAATCTATCATTATGAAAAATATTCTAAAGTAAACCCCTTAGTCTATATCTAAATTACCCACATCTACCATT
ATAAAAATAATCTAAGGTAACTCCATAATCTTTATCTAAATTACCCTTGCATGTCATCATAAAAAATAAATTAAAATACTCTTCTAAATTTGTATCTAAG
TTACCGGCAACCTAAAGTAATTATCTGTGTGGTCATTATACAAAATGTCCAAAAGTAACCCAATATATGATACTAGACATTTCTATCATTTTTAATATAG
AAATACAAAGTGAATGTATATATGCATGATGGGTGTTACCATGTAGAACATTTATACATGTATGAGAGGAAGTGATGAAAACTACATGATTTTCATGTTA
AGTACAATATATGGAGTGAGATGCAAAGTGAAAAAAGGTACGAATATGAATGAAAAAATATATAGAGTAATTACTAATTAAAAGTTAATCACAACCCAAC
AAAGACAAATGCACGTCTATATGAGTATTGGTGTTAGAATATTAAATAAACGAGAGGGTCATAGGTAAAAAGTTTGATTACTTACTAGGGTGTCTAATTT
TTAAATTACTTCATAATACAATGGCTTCTAAAATTATTAATCCATGCAGGAGCACGGATTGATGGTCTAGTTATTCAAATTTGAATAGACTAGTAGAGAC
TTTGCAAAAGCTTGTATGGAAAAATATTCTATGATTAGGTGATACAAACAAACATATCGATTAAATATGTATATATCTTCAAAAAGGACTGCAAATTGAG
GCTAAAATTAGTTTGTTTGAGTTACCAAT