Detailed information on CNT30521705


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674069Setaria italicaSetaria viridis57.4867.8399.74388forward

Expression of CNT30521705

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MLVKSPLATAGPKERAGFMDPPEKGPATRMLAPTMKPMAMGAMVPREPFLGSAEGDGGVHVAAGDVGADGDRDEQPEPVAHRHGDQAGRVKRRAAAQ

>peptide 2 (61 aa)
MRPTLRLRETKQQCTATVTRRALRSRCWRRGRGRRTCRCTGRRCRRGLRRQAGRPSRSRCW*

>peptide 3 (32 aa)
MLAPMATATNSPNPWHTATATRPAASRGAPPLN

>peptide 4 (43 aa)
MANQSSKRTHTASGALIRTKQRHAAMDAAHHSLNLTLCGQHYD*

Sequence

>CNT30521705
AATAAATTAAAAAGTCAACGGAAGCGCACTGGTTCTTGAACCCCACCAACTTCACACTCACCACATTACAGAAAAGGAGGAAATTGAGAAATAAACATGG
CCAACCAATCATCCAAGCGCACGCACACAGCCTCCGGGGCTTTGATCCGAACCAAACAACGACATGCTGCAATGGATGCTGCTCATCACAGCCTGAATCT
CACTTTATGCGGCCAACACTACGATTGAGAGAAACCAAACAACAATGCACGGCGACGGTCACTCGGCGCGCGCTTAGAAGTCGCTGCTGGCGACGGGGGC
GTGGTCGCCGCACATGTAGATGTACCGGTAGACGATGCCGGCGAGGCCTCCGCCGACAAGCGGGCCGACCCAGTAGATCCAGATGTTGGTGAAGTCGCCG
CTGGCCACGGCGGGGCCGAAGGAGCGGGCCGGGTTCATGGACCCGCCGGAGAAGGGGCCGGCGACGAGGATGTTGGCGCCGACGATGAAGCCGATGGCGA
TGGGCGCGATGGTGCCGAGGGAGCCCTTCTTGGGGTCGGCCGAAGGTGACGGCGGGGTTCACGTGGCCGCCGGAGATGTTGGCGCCGATGGCGACCGCGA
CGAACAGCCCGAACCCGTGGCACACCGCCACGGCGACCAGGCCGGCCGCGTCAAGAGGCGCGCCGCCGCTCAACT