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Detailed information on CNT30521464


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673686Setaria italicaSetaria viridis71.92100100725forward
CNT30497031Setaria italicaDigitaria exilis88.3962.779.91891forward

Expression of CNT30521464

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MVDLNRLLLHLQKVPQQQQPSLTLLFHHPLTGQWLQLPFPLGWEAH*

>peptide 2 (46 aa)
MGSTEEGSNFCSVSAPSDFAFAPPGVDSVFNTSSPTIMGTSATATG*

>peptide 3 (60 aa)
MKVATAAPRQLHQVLHFHHHKLHQCLAVPEQQGPLPSSHLHHFLKGQCLEPPLPLGWAAH*

>peptide 4 (49 aa)
MFGAQKYLSSNSSLLHLCIFIISWRASACSFLRLLAEWLTRYLYHCLTR*

Sequence

>CNT30521464
GCATAATTTACTCTACACCTCCATCACCATCTGCATCCTCACCTTCACCTCTAGGCGAGGGTAATGGTTGATCTGAACCGCCTTCTGTTGCATCTCCAAA
AAGTTCCGCAACAACAGCAGCCCTCGCTGACTTTGCTTTTTCATCATCCCCTGACAGGTCAGTGGTTGCAGCTTCCTTTCCCTCTTGGCTGGGAAGCTCA
CTAGATGATTCTACCATAACCACAGCAGACACTGGTTTCGCTTGCCTTTCAGTGTTGGCTTCGCCGAGTTCTGTATTTTCACTACCAGGGGCAGGTTCAG
CATCAGCAGTATTTTCTGTCTTTATATTTTCATCATTTCCCAAAGCGTCACTGATTGGAGCCTCATTTACCTCTTGGCTGCTGGGTGGCTCACTAGATAT
GTCTACCATAGCCTGACCAGCTGGTGTCAATTGCAGTTCTGTATCACCTCCAGCAAGTCTTGAAGTTTCACCATCAGGAGCATGTTCGGTGCTCAGAAGT
ACCTGAGCAGCAACAGTAGCCTCTTGCACCTTTGCATTTTCATTATTTCCTGGAGGGCCAGTGCTTGCAGCTTCCTTCGCCTCTTGGCTGAGTGGCTCAC
TAGATATCTCTACCATTGCCTCACCAGATGAAGGTGGCAACTGCAGCTCCAAGGCAGCTTCACCAAGTTTTGCATTTTCACCACCATAAGCTGCATCAGT
GTTTAGCTGTCCCTGAGCAGCAGGGGCCTCTTCCATCTTCACATCTTCATCATTTCCTGAAAGGTCAGTGCTTGGAGCCTCCTTTACCTCTTGGCTGGGC
AGCTCACTAGATACGTCTACCATGGGCTCAACAGAGGAAGGTAGCAATTTCTGTTCAGTGTCAGCTCCATCAGATTTTGCATTTGCACCACCAGGTGTAG
ACTCCGTGTTTAATACCTCGTCTCCCACTATAATGGGAACATCAGCTACAGCAACAGGCTGAGTCGTACATTGCATCTCACGCTCATCGAATCCCGTCCC
TCGATTCA