Detailed information on CNT30521236


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697223Setaria italicaOryza sativa8.8720.4186.67120forward
CNT30596268Setaria italicaOryza meridionalis8.8732.1786.67120reverse complement
CNT30103753Setaria italicaOryza rufipogon8.8723.7685.83120forward

Expression of CNT30521236

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MSPSANMCGSNEVWVMSKVRSSFQKSLGIYVQLKN*

>peptide 2 (54 aa)
PVPPPSPPPHDPFPAHLLHSPLLPSTSRSPPLQQGSRREGERWIEEEERIEEIC*

>peptide 3 (65 aa)
MACSLVIILWHCISLHGMAFEVVSRTYGYDHTGKASFIGYNDAASYLVGYEGRSSYAYAYAYSIV*

>peptide 4 (76 aa)
QCRPPLPLLTTPSQHTSSTLHCSLPPLDLLHCSKDREEKEKDGLKRKRGSRRYARSVFFPNLPLRISIGKPWVVLL*

>peptide 5 (78 aa)
MNKLFVHLFVLSWLVLLSLSCGIAFHCMAWHLKLCHEPMVTIIPVKHRLLGITMQLHTLLGMKAGVHMHMHMHIASSN*

Sequence

>CNT30521236
CCAGTGCCGCCCCCCTCTCCCCCTCCTCACGACCCCTTCCCAGCACACCTCCTCCACTCTCCACTGCTCCCTTCCACCTCTAGATCTCCTCCATTGCAGC
AAGGATCGAGAAGAGAAGGAGAAAGATGGATTGAAGAGGAAGAGAGGATCGAGGAGATATGCTAGATCGGTATTTTTCCCCAACCTCCCCTTACGGATTT
CCATAGGGAAGCCTTGGGTGGTATTGCTATGAGGCTTGTACGTCTACATGGTCGGTAAAGGCAAGTGAACGTAGCTGTTACATTGCTACAACTTTAACAT
GTTATTTTTACTACCTCCACTTATAAAATGAAGTGCACATATTTATACGTGATAATCTGAAATGTACATTTGTGTGATAATCTGAAATATTATACGTGAT
GTTTATAAGTTTGAGAAGAGTATAAATATGTCATTCTAATATAGCTATATAGTTGGTAAACAGCTTTTTACTTTAACATGGGTGAGTATATGAATGGATT
GTTCAATGGATCAGGAATTTTGAAAATATGGGGCTGAAAGTATATTTTACATATAGCATATATACTTGGTGATTTATTCTATGATATATTTTTTTCTACT
GTACTAAAGTCTATGGAATCTATGGAATCCTTAGTGGTTTCGTAGCTGACGGATCTGTTTTAGAGGAATGTGATCTTGGTGAGGTATTTATGCTACCTTA
TGTCTCCTAGTGCTAACATGTGCGGATCAAATGAAGTTTGGGTTATGAGTAAGGTCAGAAGTAGTTTCCAGAAGTCTTTGGGTATATATGTTCAACTTAA
GAATTAAGTTTCGAGTTGACTAGCTCTATTTTAGAAGTTCCTTTTTAATATGATATACATAGTTTGGGCTTAGATTACGAATTTGGTGCTTTACTCCATA
TTTAAAATGATAGTACTTACATTCTATCCTATGCCTGTTGAAATGAAGGTGACCCATAGATAACATGATATGGAGAGTGGTTTTGTTGATACTTGGCATA
CATGAGATTCTGTCATCCAATCATGGTTGATACTATTTATAATGAATAAGCTCTTTGTGCATCTCTTTGTATTATCATGGCTTGTTCTCTTGTCATTATC
TTGTGGCATTGCATTTCATTGCATGGCATGGCATTTGAAGTTGTGTCACGAACCTATGGTTACGATCATACCGGTAAAGCATCGTTTATTGGGTATAACG
ATGCAGCTTCATACCTTGTTGGGTATGAAGGCAGGAGTTCATATGCATATGCATATGCATATAGCATCGTCTAATTAGTATAATGATGCAGCTTCATATC
TTGATGGGTATGAAGGGAGAAGTTCATGTGCATTGATATTCATTTCAGGATGG